PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MA_89233g0010 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | Whirly | ||||||||
Protein Properties | Length: 172aa MW: 19084 Da PI: 5.2472 | ||||||||
Description | Whirly family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Whirly | 149.5 | 1.2e-46 | 1 | 129 | 11 | 139 |
Whirly 11 vkavrptfealdsgnlklkraGglllelanataerkydWekkqsfalsatevaelvdlaskesceffhdpaakgsneGkvrkalkvePlpdGsGlf 106 +k+++p++ +l+ g +++ ++G ++le+a+a+++r+ydW+kk+ als+ ev++l++l++ escef hdp++++s++Gk+ k+lkv l d G+f MA_89233g0010 1 MKPKLPDYITLNMGGVTVAKEGCMFLEFAPAVGPRQYDWSKKKIIALSVVEVGTLLSLGPDESCEFTHDPFMGKSEAGKIMKVLKVGNLQDTGGYF 96 7999******************************************************************************************** PP Whirly 107 vnlsvtnslvkgnesfsvPvskaefavlrsllv 139 +nlsvt + ++esfs+P++k+ef+v++s+++ MA_89233g0010 97 FNLSVTDRIADVDESFSIPITKGEFSVMQSIFN 129 ******************************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF08536 | 2.3E-47 | 1 | 127 | IPR013742 | Plant transcription factor |
SuperFamily | SSF54447 | 3.37E-52 | 1 | 168 | IPR009044 | ssDNA-binding transcriptional regulator |
Gene3D | G3DSA:2.30.31.10 | 9.9E-64 | 1 | 151 | IPR009044 | ssDNA-binding transcriptional regulator |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006281 | Biological Process | DNA repair | ||||
GO:0032211 | Biological Process | negative regulation of telomere maintenance via telomerase | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0045910 | Biological Process | negative regulation of DNA recombination | ||||
GO:0009508 | Cellular Component | plastid chromosome | ||||
GO:0009570 | Cellular Component | chloroplast stroma | ||||
GO:0003697 | Molecular Function | single-stranded DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0003723 | Molecular Function | RNA binding | ||||
GO:0042162 | Molecular Function | telomeric DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 172 aa Download sequence Send to blast |
MKPKLPDYIT LNMGGVTVAK EGCMFLEFAP AVGPRQYDWS KKKIIALSVV EVGTLLSLGP 60 DESCEFTHDP FMGKSEAGKI MKVLKVGNLQ DTGGYFFNLS VTDRIADVDE SFSIPITKGE 120 FSVMQSIFNF ILPYLMGWHA YMDSTKLNES GHFKSGGPSI AKRPDLEWDV PF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4koo_A | 5e-61 | 1 | 146 | 24 | 169 | Single-stranded DNA-binding protein WHY1, chloroplastic |
4koo_B | 5e-61 | 1 | 146 | 24 | 169 | Single-stranded DNA-binding protein WHY1, chloroplastic |
4koo_C | 5e-61 | 1 | 146 | 24 | 169 | Single-stranded DNA-binding protein WHY1, chloroplastic |
4koo_D | 5e-61 | 1 | 146 | 24 | 169 | Single-stranded DNA-binding protein WHY1, chloroplastic |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Single-stranded DNA-binding protein that functions in both chloroplasts and nucleus. In chloroplasts, maintains plastid genome stability by preventing break-induced and short homology-dependent illegitimate recombinations. In nucleus, modulates telomere length homeostasis by inhibiting the action of the telomerase at the extreme termini of chromosomes. Is recruited to a distal element upstream of the kinesin KP1 to mediate the transcriptional repression of KP1. Is required for full salicylic acid-dependent plant disease resistance responses. Can bind double-stranded DNA in vivo. {ECO:0000269|PubMed:14960277, ECO:0000269|PubMed:17217467, ECO:0000269|PubMed:19666500, ECO:0000269|PubMed:19669906, ECO:0000269|PubMed:20551348, ECO:0000269|PubMed:21911368}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salicylic acid (SA) and infection by H.parasitica. {ECO:0000269|PubMed:14960277, ECO:0000269|PubMed:19669906}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EF083515 | 0.0 | EF083515.1 Picea sitchensis clone WS02721_C09 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010256524.1 | 4e-63 | PREDICTED: single-stranded DNA-binding protein WHY1, chloroplastic-like | ||||
Swissprot | Q9M9S3 | 2e-62 | WHY1_ARATH; Single-stranded DNA-binding protein WHY1, chloroplastic | ||||
TrEMBL | A9NQE8 | 1e-124 | A9NQE8_PICSI; Uncharacterized protein | ||||
STRING | XP_010256524.1 | 2e-62 | (Nelumbo nucifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP2316 | 16 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G14410.1 | 7e-65 | ssDNA-binding transcriptional regulator |