PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MA_891091g0010 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | ERF | ||||||||
Protein Properties | Length: 180aa MW: 20043.2 Da PI: 6.9698 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 53.5 | 6.1e-17 | 119 | 170 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 +y+GVr + +g++ AeIrdp + k +r++lg+f taeeAa a+++a+ +++g+ MA_891091g0010 119 HYRGVRKRA-WGKFSAEIRDPAK--KGARVWLGTFITAEEAALAHDRAAFRIRGA 170 7*****887.**********954..34*************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 6.2E-30 | 118 | 177 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 3.67E-28 | 119 | 177 | No hit | No description |
SMART | SM00380 | 3.7E-29 | 119 | 180 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 8.1E-11 | 119 | 169 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.103 | 119 | 177 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 5.75E-21 | 119 | 178 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 4.9E-10 | 120 | 131 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.9E-10 | 143 | 159 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 180 aa Download sequence Send to blast |
MEITAGEGLN INMLELIRHH LLEVEDEMDI IDVHHAGGND PSSSSSSLSF SPTVTWDYIH 60 ATATASGSCQ NSGSRSTSEH NENEFIQQYS SSSSLSTVTR REKPQPREEE NGEMRKGRHY 120 RGVRKRAWGK FSAEIRDPAK KGARVWLGTF ITAEEAALAH DRAAFRIRGA RALLNFPLAF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 3e-33 | 116 | 178 | 2 | 64 | ATERF1 |
3gcc_A | 3e-33 | 116 | 178 | 2 | 64 | ATERF1 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A9NMA3 | 7e-54 | A9NMA3_PICSI; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G17500.1 | 2e-25 | ethylene responsive element binding factor 1 |