PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MA_88711g0010

Organism

Picea abies

Taxonomic ID

3329

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea

Family

LBD

Protein Properties

Length: 216aa MW: 23301.2 Da PI: 5.5706

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MA_88711g0010	genome	ConGenIE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	145.4	1.6e-45	12	111	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelal 96 +CaaCk+lrrkC++dCv+apyfp e+p+kfanvhk+FGasnv+k+l++l +++reda++sl+yeAear++dPvyG+vg i+ lq+q++ql++ela+ MA_88711g0010 12 PCAACKFLRRKCTSDCVFAPYFPPEEPQKFANVHKIFGASNVTKILNDLAPHQREDAVNSLAYEAEARLQDPVYGCVGAISVLQRQVQQLQKELAA 107 7**********************************************************************************************9 PP DUF260 97 lkee 100 +++ MA_88711g0010 108 AHAD 111 9875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	27.749	11	112	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.0E-44	12	109	IPR004883	Lateral organ boundaries, LOB
Gene3D	G3DSA:1.20.58.60	7.4E-4	67	177	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 216 aa Download sequence Send to blast
MTEMASISSN SPCAACKFLR RKCTSDCVFA PYFPPEEPQK FANVHKIFGA SNVTKILNDL 60 APHQREDAVN SLAYEAEARL QDPVYGCVGA ISVLQRQVQQ LQKELAAAHA DLLQYTSAVE 120 PFLIPHSPGS TLPSYSELQM IHAAAREQQQ QNLVEFPNSI EELQLSREQL LELAMRSGGS 180 YEAGLAALGM TNHAYALYPS PRPGGGGGSA SSGGSF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	2e-62	9	115	8	114	LOB family transfactor Ramosa2.1
5ly0_B	2e-62	9	115	8	114	LOB family transfactor Ramosa2.1
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024403438.1	5e-70	LOB domain-containing protein 6-like
Swissprot	Q8L8Q3	2e-64	LBD25_ARATH; LOB domain-containing protein 25
TrEMBL	H9X0F1	4e-79	H9X0F1_PINTA; Uncharacterized protein (Fragment)
STRING	PP1S170_78V6.1	2e-69	(Physcomitrella patens)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP60	16	318

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G27650.1	1e-66	LOB domain-containing protein 25

Publications ? help Back to Top
Kim M,Kim MJ,Pandey S,Kim J Expression and Protein Interaction Analyses Reveal Combinatorial Interactions of LBD Transcription Factors During Arabidopsis Pollen Development. Plant Cell Physiol., 2016. 57(11): p. 2291-2299 [PMID:27519310]