PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | MA_8854574g0010 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
|
||||||||
Family | LBD | ||||||||
Protein Properties | Length: 63aa MW: 7059.19 Da PI: 9.1454 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 45.2 | 2.6e-14 | 4 | 62 | 1 | 54 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeer 54 +C++C+vlr++C+++C l+p++ ++q++++ +++k++G++ +++l+++ p++ r MA_8854574g0010 4 SCNGCRVLRKGCSDSCELRPCLqwirtSESQANATVFLAKFYGRTGLMNLINSGPDHLR 62 6*********************9999888999*********************999987 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 11.393 | 3 | 63 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.0E-10 | 4 | 62 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 63 aa Download sequence Send to blast |
MRVSCNGCRV LRKGCSDSCE LRPCLQWIRT SESQANATVF LAKFYGRTGL MNLINSGPDH 60 LRP |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_021838468.1 | 1e-35 | LOB domain-containing protein 40-like | ||||
Swissprot | Q9ZW96 | 9e-35 | LBD40_ARATH; LOB domain-containing protein 40 | ||||
TrEMBL | A0A0K9REJ1 | 2e-34 | A0A0K9REJ1_SPIOL; Uncharacterized protein | ||||
STRING | VIT_14s0006g02950.t01 | 1e-34 | (Vitis vinifera) | ||||
STRING | evm.model.supercontig_282.15 | 1e-34 | (Carica papaya) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP403 | 16 | 99 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G67100.1 | 4e-37 | LOB domain-containing protein 40 |