PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_8846750g0010
Organism
Picea abies
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family MYB
Protein Properties Length: 267aa    MW: 29929.1 Da    PI: 8.9997
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_8846750g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.14.2e-081445132
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg 32
                     +g+WT eEd++l+ +++ +  g+W++ ++  g
  MA_8846750g0010 14 KGAWTREEDQRLIAYIQTHEEGRWRSLPKAAG 45
                     79***********************9988765 PP
2Myb_DNA-binding51.42.5e-1699141145
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      rg++++eE +l+++++  +G++ W++Iar+++ gRt++++k++w+
  MA_8846750g0010  99 RGNFSEEEVDLIIELHSSFGNK-WSLIARKLP-GRTDNEIKNYWN 141
                      89********************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.0E-20544IPR009057Homeodomain-like
PROSITE profilePS500909.106993IPR017877Myb-like domain
SuperFamilySSF466893.66E-61043IPR009057Homeodomain-like
SMARTSM007176.3E-71395IPR001005SANT/Myb domain
PfamPF002494.5E-61443IPR001005SANT/Myb domain
CDDcd001671.11E-51693No hitNo description
Gene3DG3DSA:1.10.10.603.0E-207696IPR009057Homeodomain-like
SuperFamilySSF466892.67E-2080151IPR009057Homeodomain-like
PROSITE profilePS5129425.77394148IPR017930Myb domain
Gene3DG3DSA:1.10.10.608.6E-2697148IPR009057Homeodomain-like
SMARTSM007171.4E-1598146IPR001005SANT/Myb domain
PfamPF002491.1E-1499142IPR001005SANT/Myb domain
CDDcd001671.97E-12101141No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    Send to blast
MGRSPCCDSA HTNKGAWTRE EDQRLIAYIQ THEEGRWRSL PKAAGFFPAL SSSMKLLVAC  60
HLIKSLYITS LHLSSAGLLR CGKSCRLRWT NYLRPDLRRG NFSEEEVDLI IELHSSFGNK  120
WSLIARKLPG RTDNEIKNYW NSSIKKKMLS RGLDPQSHRP LCSLHNSSRP VPEHQTPASQ  180
RPGTPEIADF FQQDRSASSP VQPAVSNAEE RPDLNLDLCI SLPFNSAIVS NRVTGALDRI  240
VDSNSNLVAG VCCDIGLTLR ERIFGRF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C3e-251314826128MYB TRANSFORMING PROTEIN
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ4699242e-77FJ469924.1 Pinus taeda R2R3-MYB transcription factor MYB5 mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006826645.14e-75myb-related protein 308
TrEMBLC0JTD61e-103C0JTD6_PICGL; R2R3-MYB transcription factor MYB17
STRINGERM938822e-74(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38620.12e-73myb domain protein 4