PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_8845456g0010
Organism
Picea abies
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family HSF
Protein Properties Length: 404aa    MW: 44071.8 Da    PI: 7.7778
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_8845456g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind113.81.1e-35251172103
                      HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXX CS
     HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelle 95 
                      Fl+k+y++++d+++++++sw e+ ++fvv+ + ef++++Lp+yFkh+nf+SFvRQLn+YgF+k+  ++         weF+++ F+kg+k+ll+
  MA_8845456g0010  25 FLTKTYQLVDDPATDHIVSWGEDDTTFVVWRPPEFSRDLLPNYFKHNNFSSFVRQLNTYGFRKIVPDR---------WEFANEFFRKGEKHLLC 109
                      9*****************************************************************99.........***************** PP

                      XXXXXXXX CS
     HSF_DNA-bind  96 kikrkkse 103
                      +i+r+k++
  MA_8845456g0010 110 EIHRRKTS 117
                      *****986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.103.0E-3816109IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.1E-5921114IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467853.08E-3422114IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000569.8E-202548IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.1E-3125114IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000569.8E-206375IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406488IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000569.8E-207688IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042802Molecular Functionidentical protein binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 404 aa     Download sequence    Send to blast
MALLLDSCEG MLLPMESHKS MPAPFLTKTY QLVDDPATDH IVSWGEDDTT FVVWRPPEFS  60
RDLLPNYFKH NNFSSFVRQL NTYGFRKIVP DRWEFANEFF RKGEKHLLCE IHRRKTSSQA  120
VSSSGHGMPM SSSISPTTSD DQDWSPLSTP LSSPRGVAAA TAGGGGSLMV GCSGGVGAAT  180
MHASAAAAAA AVSALSDDNE RLRRNNSMLL SELTHMRKLY NDIIFFVQHH VRIPPPPPHQ  240
SGSSSSAMNM NRVKYHQQST ANPNVVPLLE APTVPSTHRI ADHRAMNPNR EIVEISSSSS  300
GSQLFVLGTA RASSISFVDM KVKETTATNS SPPITVTVAD QEGIKSPPML FGVPLHGKKR  360
LHSQWDVVDQ AEANGLQEQC RNITWTPSKA LKTDLVLNLA PSSA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B1e-211011611131Heat shock factor protein 1
5d5v_B1e-211011611131Heat shock factor protein 1
5d5v_D1e-211011611131Heat shock factor protein 1
5hdg_A1e-21211167112Heat shock factor protein 1
5hdn_A1e-21211167112Heat shock factor protein 1
5hdn_B1e-21211167112Heat shock factor protein 1
5hdn_C1e-21211167112Heat shock factor protein 1
5hdn_D1e-21211167112Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1066940.0BT106694.1 Picea glauca clone GQ03008_E03 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010112180.11e-112heat stress transcription factor B-4
SwissprotQ9C6353e-86HSFB4_ARATH; Heat stress transcription factor B-4
TrEMBLW9SA361e-110W9SA36_9ROSA; Heat stress transcription factor B-4
STRINGXP_010112180.11e-111(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP9617233
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46264.12e-66heat shock transcription factor B4