PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MA_8812600g0010 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | HSF | ||||||||
Protein Properties | Length: 240aa MW: 27231.7 Da PI: 9.2327 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 106.8 | 1.7e-33 | 17 | 109 | 2 | 103 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelle 95 Fl k+y+ ++d+++++++sw +++n+fvv+ ++ef+ +vLp+yF h+nf+SFvRQLn+YgF+k+ + + eF+++ F+kg+++ll+ MA_8812600g0010 17 FLVKTYRFVDDPSTDRIVSWGDHNNTFVVWRPKEFSASVLPRYFNHTNFSSFVRQLNTYGFRKIVRGR---------CEFSNELFRKGQQHLLS 101 9***************************************************************9988.........67*************** PP XXXXXXXX CS HSF_DNA-bind 96 kikrkkse 103 +i+r+ks+ MA_8812600g0010 102 RIRRRKSS 109 *****987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00415 | 2.4E-51 | 13 | 106 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
SuperFamily | SSF46785 | 7.48E-32 | 15 | 106 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Gene3D | G3DSA:1.10.10.10 | 6.3E-36 | 15 | 106 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF00447 | 1.1E-29 | 17 | 106 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 3.5E-18 | 17 | 40 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 3.5E-18 | 55 | 67 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 3.5E-18 | 68 | 80 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 240 aa Download sequence Send to blast |
MEEGCVTDAG RLVAAPFLVK TYRFVDDPST DRIVSWGDHN NTFVVWRPKE FSASVLPRYF 60 NHTNFSSFVR QLNTYGFRKI VRGRCEFSNE LFRKGQQHLL SRIRRRKSSS TSTAQASRMV 120 EYDESLSLIP NSSFTVQDSA VPAAECSLSE ENEILKRNNA LLLSEIDRLQ NICTGISRSL 180 FRTTPGISTE RLPGLTHLNR PKIGNAMDRK TDNLSRSSFM TDVAQENNVN PPELFGVPLY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ldu_A | 2e-22 | 9 | 109 | 12 | 123 | Heat shock factor protein 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE). |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FJ063145 | 2e-40 | FJ063145.2 Pinus taeda isolate 4925 anonymous locus 0_17776_01 genomic sequence. | |||
GenBank | FJ063146 | 2e-40 | FJ063146.2 Pinus taeda isolate 4926 anonymous locus 0_17776_01 genomic sequence. | |||
GenBank | FJ063147 | 2e-40 | FJ063147.2 Pinus taeda isolate 4920 anonymous locus 0_17776_01 genomic sequence. | |||
GenBank | FJ063148 | 2e-40 | FJ063148.2 Pinus taeda isolate 4933 anonymous locus 0_17776_01 genomic sequence. | |||
GenBank | FJ063149 | 2e-40 | FJ063149.2 Pinus taeda isolate 4922 anonymous locus 0_17776_01 genomic sequence. | |||
GenBank | FJ063150 | 2e-40 | FJ063150.2 Pinus taeda isolate 4924 anonymous locus 0_17776_01 genomic sequence. | |||
GenBank | FJ063151 | 2e-40 | FJ063151.2 Pinus taeda isolate 4930 anonymous locus 0_17776_01 genomic sequence. | |||
GenBank | FJ063152 | 2e-40 | FJ063152.2 Pinus taeda isolate 4929 anonymous locus 0_17776_01 genomic sequence. | |||
GenBank | FJ063153 | 2e-40 | FJ063153.2 Pinus taeda isolate 4936 anonymous locus 0_17776_01 genomic sequence. | |||
GenBank | FJ063154 | 2e-40 | FJ063154.2 Pinus taeda isolate 4927 anonymous locus 0_17776_01 genomic sequence. | |||
GenBank | FJ063155 | 2e-40 | FJ063155.2 Pinus taeda isolate 4923 anonymous locus 0_17776_01 genomic sequence. | |||
GenBank | FJ063156 | 2e-40 | FJ063156.2 Pinus taeda isolate 4934 anonymous locus 0_17776_01 genomic sequence. | |||
GenBank | FJ063157 | 2e-40 | FJ063157.2 Pinus taeda isolate 4921 anonymous locus 0_17776_01 genomic sequence. | |||
GenBank | FJ063158 | 2e-40 | FJ063158.2 Pinus taeda isolate 4932 anonymous locus 0_17776_01 genomic sequence. | |||
GenBank | FJ063159 | 2e-40 | FJ063159.2 Pinus taeda isolate 4931 anonymous locus 0_17776_01 genomic sequence. | |||
GenBank | FJ063160 | 2e-40 | FJ063160.2 Pinus taeda isolate 4919 anonymous locus 0_17776_01 genomic sequence. | |||
GenBank | FJ063161 | 2e-40 | FJ063161.2 Pinus taeda isolate 4928 anonymous locus 0_17776_01 genomic sequence. | |||
GenBank | FJ063162 | 2e-40 | FJ063162.2 Pinus taeda isolate 4935 anonymous locus 0_17776_01 genomic sequence. | |||
GenBank | JQ262252 | 2e-40 | JQ262252.1 Pinus radiata isolate 13630 hypothetical protein (0_17776_01) gene, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Swissprot | Q9C635 | 7e-50 | HSFB4_ARATH; Heat stress transcription factor B-4 | ||||
TrEMBL | H9WK88 | 2e-71 | H9WK88_PINTA; Uncharacterized protein (Fragment) | ||||
STRING | GSMUA_Achr9P15370_001 | 1e-50 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP96 | 17 | 233 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G46264.1 | 2e-45 | heat shock transcription factor B4 |