PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_879g0010
Organism
Picea abies
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family C2H2
Protein Properties Length: 351aa    MW: 39378.4 Da    PI: 7.9642
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_879g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.93.6e-05190209120
                  EEETTTTEEESSHHHHHHHH CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                  ++Cp C k+F+r  n++ H+
  MA_879g0010 190 FSCPVCAKTFNRYNNMQMHM 209
                  89*****************9 PP
2zf-C2H211.80.00072275297123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  + C +C+k+F  + + ++H +++
  MA_879g0010 275 FMCCKCNKTFAVRGDWRTHEKNC 297
                  89*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.78E-5185212No hitNo description
Gene3DG3DSA:3.30.160.604.8E-6190209IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.159190217IPR007087Zinc finger, C2H2
SMARTSM003550.14190212IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280192212IPR007087Zinc finger, C2H2
SMARTSM00355130238270IPR015880Zinc finger, C2H2-like
SuperFamilySSF576679.84E-6257295No hitNo description
Gene3DG3DSA:3.30.160.601.7E-4262295IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM0035570275295IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 351 aa     Download sequence    Send to blast
MNTKSDNLHQ YTSVGTVAAA AANSISFTES IKPLEPPIDS TSNPRLPVAI PCPDSFVGHQ  60
VPSHAANDAN INDQSRVFFQ QLQQPLKGYC ESPPLREELP LLLSLSPPRE KRSGEEKFRS  120
DPEENAMVSL QIGPPNSLSE KSELTLKSTD SSDADKESIV QPRSEGRARF SESQYWIPTP  180
SQILIGATQF SCPVCAKTFN RYNNMQMHMW GHGSQYRKGP ESLRGTQPTA ILLRLPCYCC  240
TQGCRNNIDH PRAKPLKDFR TLQTHYKRKH GIKPFMCCKC NKTFAVRGDW RTHEKNCGKL  300
WYCSCGSDFK HKRSLKDHIR AFGQGHAPIA PDSFEDEEDL GSEDEVSVLS H
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator. {ECO:0000305|PubMed:20541552}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF0836420.0EF083642.1 Picea sitchensis clone WS02814_N24 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009376165.11e-120PREDICTED: zinc finger protein WIP2-like
RefseqXP_009379450.11e-120PREDICTED: zinc finger protein WIP2-like
SwissprotQ8W0311e-110ZWIP5_ARATH; Zinc finger protein WIP5
TrEMBLA9NQR71e-169A9NQR7_PICSI; Uncharacterized protein
STRINGXP_009376165.11e-119(Pyrus x bretschneideri)
STRINGXP_009379450.11e-119(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP4101597
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57670.11e-110C2H2 family protein
Publications ? help Back to Top
  1. Crawford BC, et al.
    Plant development. Genetic control of distal stem cell fate within root and embryonic meristems.
    Science, 2015. 347(6222): p. 655-9
    [PMID:25612610]