PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_86784g0010
Organism
Picea abies
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family C2H2
Protein Properties Length: 482aa    MW: 53048.2 Da    PI: 7.162
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_86784g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.74.7e-06244268123
                    EEET..TTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                    +kC    C+k+F+++ +Lk H +tH
  MA_86784g0010 244 FKCAygGCDKTFKNPQTLKMHHKTH 268
                    899999******************9 PP
2zf-C2H2120.00066302320220
                    EETTTTEEESSHHHHHHHH CS
        zf-C2H2   2 kCpdCgksFsrksnLkrHi 20 
                    +Cp C ++F   ++L+rH 
  MA_86784g0010 302 RCPVCRRTFVGLYELRRHF 320
                    8*****************6 PP
3zf-C2H210.60.0018360378523
                    TTTEEESSHHHHHHHHHHT CS
        zf-C2H2   5 dCgksFsrksnLkrHirtH 23 
                    +Cg+ F  k nL+ H +tH
  MA_86784g0010 360 KCGMKFAFKCNLVAHKKTH 378
                    7*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.32E-7240269No hitNo description
Gene3DG3DSA:3.30.160.604.0E-8242271IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003556.1E-4244268IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.198244273IPR007087Zinc finger, C2H2
PROSITE patternPS000280246268IPR007087Zinc finger, C2H2
SuperFamilySSF576678.74E-7300351No hitNo description
PROSITE patternPS000280301324IPR007087Zinc finger, C2H2
SMARTSM003550.23301324IPR015880Zinc finger, C2H2-like
SMARTSM0035567331351IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.078331352IPR007087Zinc finger, C2H2
SMARTSM00355110357378IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 482 aa     Download sequence    Send to blast
MEARLQRRNP SSNERDLAVV SFRTSGCLKI PEIDKEQRSE SRGTKKQEQT PKEEGRQGYM  60
ALESFVSMPM SPPLMPISPV DYGAIAMSSD EMSIFNATDS MEGILQDDHS ASPFEGLCHG  120
HGHGGFSAAA GAFNAPTMHP NLVSTLKNVI SQQNLDDDLH FLHTPHHGFE DAGLASDDGF  180
LNYQTEAGFQ PPAEQQNNND DDNKKKQAQQ KTRRSPKLGG DEEDREDRQI ATVSVDLIQN  240
RRPFKCAYGG CDKTFKNPQT LKMHHKTHYT DDAAEKRLGE QFLNSNTAGN CRAGHNKKIP  300
CRCPVCRRTF VGLYELRRHF GRKHSEGEKM YGCRKCGKRF YIEVDLRDHE KLCGEPIECK  360
CGMKFAFKCN LVAHKKTHPE CQDSSHSPPP PLLPNEDSCS SSSSSSYRQI HPHPSSLPVA  420
SVAAFSEDTS SAPASSSSPS SSSSAAASSM ALMVSCGVKL EDISGFPRAI TPSALLGQEP  480
RN
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF6782700.0EF678270.1 Picea sitchensis clone WS02911_K14 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024373214.15e-83zinc finger protein 467-like
TrEMBLB8LQV80.0B8LQV8_PICSI; Uncharacterized protein
STRINGPP1S339_18V6.12e-82(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1095648
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50700.12e-12indeterminate(ID)-domain 2