PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MA_86300g0010 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | LBD | ||||||||
Protein Properties | Length: 218aa MW: 23448.8 Da PI: 6.8377 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 127 | 8.7e-40 | 7 | 108 | 1 | 101 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +C aCk+lrrkC+k+Cv+apyf +++ +++fa+vhk+FGasnv+kll ++p +er da+ +++yeA+ar+rdPvyG+v++i +lqqq+++l+a+la MA_86300g0010 7 PCGACKFLRRKCVKGCVFAPYFGSDEgAAQFAAVHKIFGASNVSKLLLHIPMSERCDAVVTIAYEAQARLRDPVYGCVAHIYALQQQVASLQADLA 102 7*********************998879******************************************************************** PP DUF260 96 llkeel 101 ++++l MA_86300g0010 103 FMQAQL 108 999875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 23.329 | 6 | 108 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.4E-38 | 7 | 105 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 218 aa Download sequence Send to blast |
MNGGGAPCGA CKFLRRKCVK GCVFAPYFGS DEGAAQFAAV HKIFGASNVS KLLLHIPMSE 60 RCDAVVTIAY EAQARLRDPV YGCVAHIYAL QQQVASLQAD LAFMQAQLAN RVSAGSAIAS 120 AICPVMSASS YSQHPHQVPA HLSMPYHLIP QPYNARVLGV KEENACGFAN SMDCEFSISP 180 NDNSSPQMEV LQRCRNLEKT GEDSEELEAL AQALLLRG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 3e-38 | 3 | 108 | 7 | 111 | LOB family transfactor Ramosa2.1 |
5ly0_B | 3e-38 | 3 | 108 | 7 | 111 | LOB family transfactor Ramosa2.1 |
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Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | D5A9D3 | 1e-108 | D5A9D3_PICSI; Uncharacterized protein | ||||
STRING | PP1S261_2V6.1 | 2e-57 | (Physcomitrella patens) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP405 | 15 | 100 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G03760.1 | 2e-57 | LOB domain-containing protein 20 |