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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | MA_861471g0010 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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| Family | MYB_related | ||||||||
| Protein Properties | Length: 207aa MW: 23083.9 Da PI: 5.2797 | ||||||||
| Description | MYB_related family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | Myb_DNA-binding | 28.9 | 2.8e-09 | 4 | 28 | 22 | 48 |
T-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 22 gtWktIartmgkgRtlkqcksrwqkyl 48
+ W++Ia +++ gRt++++k++w+++l
MA_861471g0010 4 R-WSLIAGRLP-GRTDNEIKNYWNTHL 28
5.*********.************996 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| PROSITE profile | PS51294 | 16.195 | 1 | 32 | IPR017930 | Myb domain |
| SuperFamily | SSF46689 | 4.6E-8 | 3 | 32 | IPR009057 | Homeodomain-like |
| Gene3D | G3DSA:1.10.10.60 | 1.3E-13 | 3 | 28 | IPR009057 | Homeodomain-like |
| CDD | cd00167 | 7.12E-8 | 3 | 28 | No hit | No description |
| Pfam | PF00249 | 4.1E-7 | 4 | 28 | IPR001005 | SANT/Myb domain |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0003677 | Molecular Function | DNA binding | ||||
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 207 aa Download sequence Send to blast |
MYNRWSLIAG RLPGRTDNEI KNYWNTHLSK KLSVMIKFDS RRRSPPSADG DHGIVKCKAI 60 RAATMSMVNN CSHEINSLEA SSTVAKMGSS KSSWQLILED SEPIMPFPLA INTQEIRSME 120 TVHDSACSGF PTTLDLPDFP FSEQFAGKHA DINAYSDIFS VSSGDFDLLS SPFDSPIDMR 180 AGGFWTGSLP AQTEEIHELF WRNDRDG |
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Representative plant | OGRP5 | 17 | 1784 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT1G22640.1 | 1e-14 | myb domain protein 3 | ||||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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