PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MA_85817g0020 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | LBD | ||||||||
Protein Properties | Length: 199aa MW: 22309.3 Da PI: 6.7846 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 131.8 | 2.7e-41 | 49 | 149 | 1 | 101 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelal 96 +Ca+Ck++r+kC+++Cvlapyfp+++p+kf vhk+FG+ +v+kll++lp e+r da+ss+vyeA r rdPv+G++gvi++lq+++++l+++la+ MA_85817g0020 49 PCAGCKIQRKKCSQNCVLAPYFPQDKPHKFLLVHKVFGNGHVVKLLQDLPAEQRGDAVSSMVYEASQRFRDPVHGCAGVINDLQNKVAELQSQLAS 144 7*********************************************************************************************** PP DUF260 97 lkeel 101 ++++l MA_85817g0020 145 TQTQL 149 99875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 25.586 | 48 | 149 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 8.0E-40 | 49 | 146 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 199 aa Download sequence Send to blast |
MLPRRASLFF HLSIPSFTFE NTLPVPTRSN GKMSDMSAKS KPETWSTSPC AGCKIQRKKC 60 SQNCVLAPYF PQDKPHKFLL VHKVFGNGHV VKLLQDLPAE QRGDAVSSMV YEASQRFRDP 120 VHGCAGVIND LQNKVAELQS QLASTQTQLA NISMHHANLL TIFNEGSGPH FYNGSLLENE 180 DTHTLDDDEP MELWEPLWT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 6e-35 | 46 | 149 | 8 | 111 | LOB family transfactor Ramosa2.1 |
5ly0_B | 6e-35 | 46 | 149 | 8 | 111 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EF678142 | 0.0 | EF678142.1 Picea sitchensis clone WS02823_H17 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009588230.1 | 2e-51 | PREDICTED: LOB domain-containing protein 1-like | ||||
Refseq | XP_012449770.1 | 4e-51 | PREDICTED: LOB domain-containing protein 1-like | ||||
Refseq | XP_016671354.1 | 4e-51 | PREDICTED: LOB domain-containing protein 1-like | ||||
Swissprot | Q9LQR0 | 3e-48 | LBD1_ARATH; LOB domain-containing protein 1 | ||||
TrEMBL | B8LQI9 | 1e-121 | B8LQI9_PICSI; Uncharacterized protein | ||||
STRING | Aquca_027_00112.1 | 2e-50 | (Aquilegia coerulea) | ||||
STRING | Gorai.010G203800.1 | 2e-50 | (Gossypium raimondii) | ||||
STRING | XP_009588230.1 | 9e-51 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP60 | 16 | 318 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07900.1 | 4e-44 | LOB domain-containing protein 1 |