PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MA_85817g0010 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | LBD | ||||||||
Protein Properties | Length: 164aa MW: 18392.8 Da PI: 5.9161 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 127.8 | 4.9e-40 | 14 | 113 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelal 96 +Ca+Ck++r+kC+++Cvlapyfp+++p+kf vh+lFG+ +v+k l++lpee+r da++s+vyeA r rdPv+G+vgvi++lq+++++l++++a+ MA_85817g0010 14 PCASCKIQRKKCSQSCVLAPYFPQDNPEKFLLVHRLFGNGHVIKSLQELPEEQRGDAVNSMVYEASQRFRDPVHGSVGVINDLQNKVAELQSQMAS 109 7**********************************************************************************************9 PP DUF260 97 lkee 100 +++e MA_85817g0010 110 TQTE 113 9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 25.048 | 13 | 114 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.1E-38 | 14 | 111 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 164 aa Download sequence Send to blast |
MSANTKPEMR STSPCASCKI QRKKCSQSCV LAPYFPQDNP EKFLLVHRLF GNGHVIKSLQ 60 ELPEEQRGDA VNSMVYEASQ RFRDPVHGSV GVINDLQNKV AELQSQMAST QTELANISMR 120 HANLLTLLNG GSDPHCYNGL LLQSEDTHVL DDVDPMELWE PLWK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 1e-33 | 11 | 114 | 8 | 111 | LOB family transfactor Ramosa2.1 |
5ly0_B | 1e-33 | 11 | 114 | 8 | 111 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EF677634 | 0.0 | EF677634.1 Picea sitchensis clone WS02772_C10 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012461085.1 | 1e-49 | PREDICTED: LOB domain-containing protein 1-like | ||||
Swissprot | Q9LQR0 | 1e-48 | LBD1_ARATH; LOB domain-containing protein 1 | ||||
TrEMBL | B8LP64 | 1e-117 | B8LP64_PICSI; Uncharacterized protein | ||||
STRING | Gorai.012G094200.1 | 5e-49 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP60 | 16 | 318 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07900.1 | 4e-51 | LOB domain-containing protein 1 |