PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MA_85675g0010 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | C2H2 | ||||||||
Protein Properties | Length: 519aa MW: 57731.1 Da PI: 6.4727 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 11.3 | 0.0011 | 27 | 49 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y C++C+k+F + L H+r H MA_85675g0010 27 YLCKICSKRFVSGRALGGHMRAH 49 56*******************98 PP | |||||||
2 | zf-C2H2 | 14.6 | 9.5e-05 | 132 | 149 | 3 | 20 |
ETTTTEEESSHHHHHHHH CS zf-C2H2 3 CpdCgksFsrksnLkrHi 20 C Cgk Fs++ +L H+ MA_85675g0010 132 CDLCGKEFSSWKDLFGHM 149 *****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13912 | 2.3E-8 | 27 | 49 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.074 | 27 | 49 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.076 | 27 | 49 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 1.78E-5 | 27 | 49 | No hit | No description |
PROSITE pattern | PS00028 | 0 | 29 | 49 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 1.78E-5 | 125 | 152 | No hit | No description |
SMART | SM00355 | 0.01 | 130 | 152 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.058 | 130 | 157 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 5.9E-7 | 131 | 154 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 132 | 152 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 3.66E-7 | 321 | 344 | No hit | No description |
Pfam | PF13912 | 2.6E-8 | 321 | 346 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 10.118 | 322 | 349 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.083 | 322 | 344 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 324 | 344 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 3.66E-7 | 409 | 436 | No hit | No description |
Pfam | PF13912 | 1.2E-12 | 414 | 437 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.48 | 414 | 436 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.203 | 414 | 436 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 416 | 436 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 519 aa Download sequence Send to blast |
MTIMDILYPK SQAMEVFKKQ REHPLSYLCK ICSKRFVSGR ALGGHMRAHV PASMAADTVA 60 QTEFRKTKRP RTSDDKSMEE KEDEEGLDGN GTNLMFALGR NSKRSWRFAD RDSSLLLGYG 120 FDSKPIDSSI NCDLCGKEFS SWKDLFGHMI CHYETHQDSG DAHLEESQKH ETQETQDQDS 180 CDTHFEESQK HETHDQEEHR SDSDDEIEID HPSGNSSKFD KGKRSKRPGY TIKLINPHEQ 240 FGLETNNEEE DMAMCLVMLA SGANTAQNPQ SQVGAEKPGS GDLKLSSTGC QLPKCIRKKL 300 KSNKIDGDAV LYDGDEVKKA RYKCITCNKV FHSHQALGGH RASHNKVKGS VSQIEKENES 360 LEEDITDEEL IPGSDSQLPR NFCKPHPKEK TKDSCVKART IETAAFSGKK SRIHECSICH 420 RVFASGQALG GHKRCHWVSA GASDSITTSS SNKETPVQQQ QMPARVELLD LNLPAPVDDD 480 CDAGNLNNLG GNAVDSHGSS FAQTHNPPYL QSWLKGSYP |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A0C9RQJ1 | 1e-141 | A0A0C9RQJ1_9SPER; TSA: Wollemia nobilis Ref_Wollemi_Transcript_25048_2114 transcribed RNA sequence |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP2521 | 8 | 20 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G45120.1 | 8e-23 | C2H2-like zinc finger protein |