PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_8552524g0010
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family ERF
Protein Properties Length: 349aa    MW: 39199.8 Da    PI: 4.8455
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_8552524g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.48.5e-19200250255
              AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                      +y+GVr+++ +g+++AeIrd s    + +r++lg+f taeeAa a+++a+ k++g
  MA_8552524g0010 200 HYRGVRQRP-WGKFAAEIRDSSR---QgARVWLGTFTTAEEAALAYDRAAYKMRG 250
                      7********.**********422...24*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.9E-31199259IPR001471AP2/ERF domain
PROSITE profilePS5103223.301200258IPR001471AP2/ERF domain
PfamPF008475.4E-14200250IPR001471AP2/ERF domain
SMARTSM003801.0E-37200264IPR001471AP2/ERF domain
CDDcd000185.53E-30200258No hitNo description
SuperFamilySSF541711.24E-22200260IPR016177DNA-binding domain
PRINTSPR003671.1E-10201212IPR001471AP2/ERF domain
PRINTSPR003671.1E-10224240IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
MAFNSRNPEV EYTAMSVFDG IQSRLLDDFE PSFFLTGNWG YDPTRNWSPE EENFIQTALT  60
ADSVDDSRRE TETETLIAAV KSSRPLLSVS VTRHESFDWE KISVDWALKN SVAPSVSPCF  120
SAAWTKLPLD ENDSEDMVLY GILKEAATKG WLPRTPKEEP VTEIKKEAAL PVKPDADIRQ  180
ETGATPPPPP KTVKNNVGRH YRGVRQRPWG KFAAEIRDSS RQGARVWLGT FTTAEEAALA  240
YDRAAYKMRG SRALLNFPLQ VGAEDSNTCN NNTSTVEKVE SNLSKKRQRE EVEVQWDRQC  300
RVRFEDSNTM DHEMVEELLG GKLATPPLTP SGIDMSFTGF LSRGQLTVN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-32198261366ATERF1
3gcc_A1e-32198261366ATERF1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF0839840.0EF083984.1 Picea sitchensis clone WS0272_A02 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA9NRQ50.0A9NRQ5_PICSI; Uncharacterized protein
STRINGA0A087G2E15e-51(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17500.15e-38ethylene responsive element binding factor 1