PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MA_8552524g0010 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | ERF | ||||||||
Protein Properties | Length: 349aa MW: 39199.8 Da PI: 4.8455 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 59.4 | 8.5e-19 | 200 | 250 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+++AeIrd s + +r++lg+f taeeAa a+++a+ k++g MA_8552524g0010 200 HYRGVRQRP-WGKFAAEIRDSSR---QgARVWLGTFTTAEEAALAYDRAAYKMRG 250 7********.**********422...24*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 1.9E-31 | 199 | 259 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.301 | 200 | 258 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 5.4E-14 | 200 | 250 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.0E-37 | 200 | 264 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 5.53E-30 | 200 | 258 | No hit | No description |
SuperFamily | SSF54171 | 1.24E-22 | 200 | 260 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 1.1E-10 | 201 | 212 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.1E-10 | 224 | 240 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 349 aa Download sequence Send to blast |
MAFNSRNPEV EYTAMSVFDG IQSRLLDDFE PSFFLTGNWG YDPTRNWSPE EENFIQTALT 60 ADSVDDSRRE TETETLIAAV KSSRPLLSVS VTRHESFDWE KISVDWALKN SVAPSVSPCF 120 SAAWTKLPLD ENDSEDMVLY GILKEAATKG WLPRTPKEEP VTEIKKEAAL PVKPDADIRQ 180 ETGATPPPPP KTVKNNVGRH YRGVRQRPWG KFAAEIRDSS RQGARVWLGT FTTAEEAALA 240 YDRAAYKMRG SRALLNFPLQ VGAEDSNTCN NNTSTVEKVE SNLSKKRQRE EVEVQWDRQC 300 RVRFEDSNTM DHEMVEELLG GKLATPPLTP SGIDMSFTGF LSRGQLTVN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 1e-32 | 198 | 261 | 3 | 66 | ATERF1 |
3gcc_A | 1e-32 | 198 | 261 | 3 | 66 | ATERF1 |
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Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EF083984 | 0.0 | EF083984.1 Picea sitchensis clone WS0272_A02 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A9NRQ5 | 0.0 | A9NRQ5_PICSI; Uncharacterized protein | ||||
STRING | A0A087G2E1 | 5e-51 | (Arabis alpina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G17500.1 | 5e-38 | ethylene responsive element binding factor 1 |