PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MA_8533126g0010 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | NAC | ||||||||
Protein Properties | Length: 325aa MW: 36372.5 Da PI: 5.1286 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 107 | 2.3e-33 | 8 | 142 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk......leleev.ikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkat 86 lp+G++F+P+d+el+ +L++kv + ++++ +ke +i++++P++Lp vk++ + ++fF++++k+y+tg+rk+r++++ +W++t MA_8533126g0010 8 LPAGVKFDPSDQELM-GHLAAKVGVGNskshplIDEFIPtLKEDdGICSSHPENLP-GVKQDGSVCHFFHRTAKAYHTGNRKRRKIQEDRWHKT 99 799************.789999877774565443333333555546**********.777888999**************************** PP NAM 87 gkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 gk+++v + +g + g kk+Lv+y +g+ + ekt+Wvmh+y++ MA_8533126g0010 100 GKTRPVNE-NGIQRGWKKILVLYmsTGKGKMFEKTNWVMHQYHF 142 *******9.99************7768888899*********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 3.92E-37 | 2 | 161 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 32.092 | 8 | 161 | IPR003441 | NAC domain |
Pfam | PF02365 | 7.3E-15 | 9 | 141 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 325 aa Download sequence Send to blast |
VAQEWPGLPA GVKFDPSDQE LMGHLAAKVG VGNSKSHPLI DEFIPTLKED DGICSSHPEN 60 LPGVKQDGSV CHFFHRTAKA YHTGNRKRRK IQEDRWHKTG KTRPVNENGI QRGWKKILVL 120 YMSTGKGKMF EKTNWVMHQY HFGSEEDEND GEFVVSKIFY QQQHKQLDKN EVPQETEVTS 180 VIPIPDPLTP VTSTPELSCY AKSQADLDAA KEEQLNCIDS PGQVAGFRVA TFEGNACTNN 240 LTYQAVNDQA NYDSLQGNPS PQNLILDPVE YGRIKAKELD KAVNASDAIP CLDNIELDTP 300 PDIENIELNF NSQESLSAWT RDKTH |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor regulating the transcriptional activation response to gamma irradiation (PubMed:19549833). Required for stem-cell death induced by UVB or by gamma irradiation (PubMed:20634150). Not required for ATM activation, but participates in pathways governed by both ATM and ATR sensor kinases (PubMed:19549833). Involved in DNA damage response (DDR) system that regulates cell cycle arrest (PubMed:24399300). Functional homolog of animal p53 (PubMed:24736489). Regulates SMR5 and SMR7 transcription (PubMed:24399300). Regulates DNA repair and cytokinin signaling separately and plays a key role in controlling lateral root formation under genotoxic stress. {ECO:0000269|PubMed:19549833, ECO:0000269|PubMed:20634150, ECO:0000269|PubMed:24399300, ECO:0000305|PubMed:24736489}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Not induced by zeocin or ionizing radiation treatment. {ECO:0000269|PubMed:23907539}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT119033 | 0.0 | BT119033.1 Picea glauca clone GQ04013_K12 mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022774374.1 | 4e-96 | SUPPRESSOR OF GAMMA RESPONSE 1-like | ||||
Swissprot | Q6NQK2 | 2e-76 | NAC8_ARATH; SUPPRESSOR OF GAMMA RESPONSE 1 | ||||
TrEMBL | W1NK30 | 3e-93 | W1NK30_AMBTC; Uncharacterized protein | ||||
STRING | ERM95816 | 6e-94 | (Amborella trichopoda) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP525 | 15 | 85 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G25580.1 | 9e-79 | NAC family protein |