PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_8518489g0010
Organism
Picea abies
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family ERF
Protein Properties Length: 411aa    MW: 45755.8 Da    PI: 5.2485
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_8518489g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2651.6e-2080128355
              AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      y+G+r+++ +g+W+AeIrdp++    +r++lg+f taeeAa+a++aa++k++g
  MA_8518489g0010  80 YRGIRQRP-WGKWAAEIRDPRK---GARVWLGTFNTAEEAARAYDAAARKIRG 128
                      9*******.**********954...4*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003801.2E-3679142IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.7E-3279137IPR001471AP2/ERF domain
SuperFamilySSF541712.16E-2279137IPR016177DNA-binding domain
PROSITE profilePS5103223.99979136IPR001471AP2/ERF domain
PfamPF008475.7E-1480128IPR001471AP2/ERF domain
CDDcd000182.39E-1980135No hitNo description
PRINTSPR003671.0E-118091IPR001471AP2/ERF domain
PRINTSPR003671.0E-11102118IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 411 aa     Download sequence    Send to blast
FSEFINGGAP VETFDVSVNV DDDDEDFDDD DFLDLDESYQ NKNKKKKQQP IPTKGFELPL  60
ARSLEGPAAK SAGRKRKNLY RGIRQRPWGK WAAEIRDPRK GARVWLGTFN TAEEAARAYD  120
AAARKIRGKK AKVNFVDEPP PIKKETNNGK GSRKESSKKI KSCTTPKADH FQGFKMANPS  180
NTHLNFNQKS PNPSFDDLGF LNSESQLHSI CNRNFATKQS SCALPAYSTD FSDFDESEVE  240
NLVPQPASFE PMKNIHKRKG FNYFDSDTSS VSVDRSHFSW IPEVKTPEIS SVPKAEAESN  300
QCNFADISTP VATSVSVGSP EVVLSPFNNG LNKSPSVEDV VASEKSPKLE ESSQLEISED  360
LPSLESYPWL FQLPYFEGNL DQSLQSVGIG EASFPDVTMG CHLRVTSFNW I
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-2180135359ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1198740.0BT119874.1 Picea glauca clone GQ04111_I24 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA9NWS10.0A9NWS1_PICSI; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G53910.34e-22related to AP2 12