PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MA_84752g0010 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | LBD | ||||||||
Protein Properties | Length: 237aa MW: 26690.7 Da PI: 9.2728 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 129.1 | 2e-40 | 83 | 182 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelal 96 +CaaCk+lrr+Ca++C++apyf +p+kfa vhk+FGasnv+k+l ++pe++r da++slvyeA+ar+rdPvyG++g+i +lq+q + l++el++ MA_84752g0010 83 PCAACKLLRRRCAQECPFAPYFSPLEPQKFASVHKVFGASNVSKMLMEVPENQRADAANSLVYEANARLRDPVYGSTGTIYSLQRQAQVLRVELNA 178 7**********************************************************************************************9 PP DUF260 97 lkee 100 +++e MA_84752g0010 179 VRTE 182 9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 25.199 | 82 | 183 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 5.6E-40 | 83 | 180 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 237 aa Download sequence Send to blast |
MGNRIARFKP VAINAPPRFC FDTIVSNMSI FENSSPLFSR IAHLQVLPLI SDKDRKIIEQ 60 PDICEMTRRP TLGSPAALNT ITPCAACKLL RRRCAQECPF APYFSPLEPQ KFASVHKVFG 120 ASNVSKMLME VPENQRADAA NSLVYEANAR LRDPVYGSTG TIYSLQRQAQ VLRVELNAVR 180 TEIMRYKCRD PILQPPMLGV YNVNSDDCKV NNPTTSTVNA DDHTGKQRYY SIINHNR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 3e-44 | 74 | 190 | 2 | 118 | LOB family transfactor Ramosa2.1 |
5ly0_B | 3e-44 | 74 | 190 | 2 | 118 | LOB family transfactor Ramosa2.1 |
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Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012448054.1 | 1e-70 | PREDICTED: LOB domain-containing protein 15 | ||||
Swissprot | Q8L5T5 | 2e-60 | LBD15_ARATH; LOB domain-containing protein 15 | ||||
TrEMBL | A0A0D2QQ34 | 2e-69 | A0A0D2QQ34_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.009G295000.1 | 1e-69 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP60 | 16 | 318 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G40470.1 | 8e-63 | LOB domain-containing protein 15 |
Publications ? help Back to Top | |||
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