PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MA_8408g0030

Organism

Picea abies

Taxonomic ID

3329

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea

Family

C3H

Protein Properties

Length: 793aa MW: 87709.2 Da PI: 9.0365

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MA_8408g0030	genome	ConGenIE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	20.9	6.4e-07	277	298	5	27
--SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHgp 27 +C +f++ G C++G++C++ H++ MA_8408g0030 277 PCYDFSK-GRCHRGSSCRYLHSE 298 8****.***********95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50103	15.572	272	299	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	4.3E-4	272	298	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	1.4E-4	277	298	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	4.4E-4	277	298	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	12.774	371	398	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	0.0032	371	397	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 793 aa Download sequence Send to blast
MAVDLASEMV IFAEKKSGPN FGNDDIECRK LEAVNPCNDG KSFKEGSHSN NSDQHISLNN 60 NISSEVANMK PNITLGPDNV KSEMQVRLKP DNKAMKTDRY GRIIREGNSD SESDGGPHAA 120 RGRAGPSQSR SPSPSHSRWR KRTYSRSPRR KTRWSSSRSR SPKRRRSRSR TPVYDFRRGG 180 DARGERINRG TSGGGVMQGP SGDSVSRWAG GGRGRERIEN RQDVAKSVGG KESFLSGELD 240 KTRSISPDRF PDEHESHYYV ERRNQESYGY NDRSATPCYD FSKGRCHRGS SCRYLHSETV 300 PDTVGRWSSV GKSRERTENR QDITKPFCGT DGFGSVEVDK TRNFSPNRLH NQHYRHNSRD 360 KRSHEIDRRN DRSVPACIFF ARGCCLKGLS CRFFHPDAPG NNDSGRGRER PESRSDITEP 420 FGGKGSSAAV EMDRNKNFFL ERSSYGHDRR DPFKGHRQET EKHNYSSANP VVKTQFSTPG 480 TEKLQSHREE LWSQTQSTDA PSQTNRRENV GGHLMPRDLP SQSLSWEKFD AESSEGPSAP 540 SVTDKIQPHN PGEDIQQPLQ SHDLQFQTEN LHSKNDLNST PFLSLPGDLP ALLDHCVTGH 600 SLLSGQSLGS ERVPLQLHDG WKGSSPAQSN VESNVVSLPA GFSTNSSIIK PPAEHSGIGG 660 CSMSYHQTSI MPNLNSVPQP GFVHGTTVQE VDYCANDFTT HVATASTEQR SVCAQPSLEL 720 VNLRHASSTG QESLMPRLIT MPLFPPQNQS GGQIGSVPLA LFAEQKAFAC SQTGVPFTPG 780 LSTANQASKD IPX

Sequence ? help Back to Top

Protein Sequence Length: 793 aa Download sequence Send to blast

MAVDLASEMV IFAEKKSGPN FGNDDIECRK LEAVNPCNDG KSFKEGSHSN NSDQHISLNN  60
NISSEVANMK PNITLGPDNV KSEMQVRLKP DNKAMKTDRY GRIIREGNSD SESDGGPHAA  120
RGRAGPSQSR SPSPSHSRWR KRTYSRSPRR KTRWSSSRSR SPKRRRSRSR TPVYDFRRGG  180
DARGERINRG TSGGGVMQGP SGDSVSRWAG GGRGRERIEN RQDVAKSVGG KESFLSGELD  240
KTRSISPDRF PDEHESHYYV ERRNQESYGY NDRSATPCYD FSKGRCHRGS SCRYLHSETV  300
PDTVGRWSSV GKSRERTENR QDITKPFCGT DGFGSVEVDK TRNFSPNRLH NQHYRHNSRD  360
KRSHEIDRRN DRSVPACIFF ARGCCLKGLS CRFFHPDAPG NNDSGRGRER PESRSDITEP  420
FGGKGSSAAV EMDRNKNFFL ERSSYGHDRR DPFKGHRQET EKHNYSSANP VVKTQFSTPG  480
TEKLQSHREE LWSQTQSTDA PSQTNRRENV GGHLMPRDLP SQSLSWEKFD AESSEGPSAP  540
SVTDKIQPHN PGEDIQQPLQ SHDLQFQTEN LHSKNDLNST PFLSLPGDLP ALLDHCVTGH  600
SLLSGQSLGS ERVPLQLHDG WKGSSPAQSN VESNVVSLPA GFSTNSSIIK PPAEHSGIGG  660
CSMSYHQTSI MPNLNSVPQP GFVHGTTVQE VDYCANDFTT HVATASTEQR SVCAQPSLEL  720
VNLRHASSTG QESLMPRLIT MPLFPPQNQS GGQIGSVPLA LFAEQKAFAC SQTGVPFTPG  780
LSTANQASKD IPX

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	148	165	RRKTRWSSSRSRSPKRRR