PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MA_83924g0010 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | C3H | ||||||||
Protein Properties | Length: 311aa MW: 33663.3 Da PI: 9.13 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 25.8 | 1.8e-08 | 114 | 140 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +kt+lC+++ + C++Gd+C+FaHg+ MA_83924g0010 114 FKTRLCNRYGTNEGCQFGDKCHFAHGE 140 79*********99************96 PP | |||||||
2 | zf-CCCH | 38.5 | 1.9e-12 | 277 | 300 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 kt+lC ++a+ GtC +GdrC+FaHg MA_83924g0010 277 KTKLCENYAK-GTCTFGDRCNFAHG 300 9*********.*************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF14608 | 3.3 | 59 | 69 | No hit | No description |
PROSITE profile | PS50103 | 6.456 | 59 | 72 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.019 | 113 | 140 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.366 | 113 | 141 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.2E-5 | 114 | 140 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.8E-13 | 114 | 144 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.44E-8 | 114 | 144 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF54791 | 1.61E-14 | 187 | 265 | IPR004088 | K Homology domain, type 1 |
Gene3D | G3DSA:3.30.1370.10 | 4.1E-14 | 192 | 261 | IPR004088 | K Homology domain, type 1 |
SMART | SM00322 | 2.5E-8 | 192 | 262 | IPR004087 | K Homology domain |
PROSITE profile | PS50084 | 13.397 | 193 | 257 | IPR004088 | K Homology domain, type 1 |
Pfam | PF00013 | 1.3E-10 | 195 | 259 | IPR004088 | K Homology domain, type 1 |
CDD | cd00105 | 1.14E-11 | 195 | 257 | No hit | No description |
Gene3D | G3DSA:4.10.1000.10 | 1.5E-14 | 274 | 306 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 7.33E-9 | 274 | 305 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 17.075 | 275 | 302 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 7.5E-8 | 275 | 301 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 7.7E-10 | 277 | 300 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003723 | Molecular Function | RNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 311 aa Download sequence Send to blast |
MLRPMEIHGE ISSVEAPVDD DFKFSKNLNL VQRRWCLRQA KGMMLTGSMR GKRGATSGCP 60 FGEGCHYLHY VPGGVNAIPP IPTLGNTFGA ASRKAIGFTP SVPPLDKPDP GLGFKTRLCN 120 RYGTNEGCQF GDKCHFAHGE KELRKGNVLA KDLDRERIAG PYSSMAASGV DSGHSLYRDP 180 PPGTAAAANF GASSTAKISI DASLASCIIG KGGVNTKQIF RITGTKMFIK ENESNPNLKN 240 IELEGSFDQI KQATAMVREL IMHNEIQSAK PYVQNRKTKL CENYAKGTCT FGDRCNFAHG 300 ANELREQSAG S |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EF084807 | 0.0 | EF084807.1 Picea sitchensis clone WS0282_P16 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010265899.1 | 2e-88 | PREDICTED: zinc finger CCCH domain-containing protein 14-like | ||||
Swissprot | Q7F8R0 | 2e-76 | C3H14_ORYSJ; Zinc finger CCCH domain-containing protein 14 | ||||
TrEMBL | A9NU06 | 0.0 | A9NU06_PICSI; Uncharacterized protein | ||||
STRING | XP_010265899.1 | 6e-88 | (Nelumbo nucifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP1026 | 17 | 56 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06770.1 | 3e-44 | C3H family protein |