PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_8390711g0010
Organism
Picea abies
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family C2H2
Protein Properties Length: 281aa    MW: 31765.1 Da    PI: 8.8703
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_8390711g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H220.11.7e-06140164123
                      EEET..TTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                      +kC    C+k+F+++ +Lk H++tH
  MA_8390711g0010 140 FKCFygGCSKTFKNPQTLKMHQKTH 164
                      789999******************9 PP
2zf-C2H2120.00062197215220
                      EETTTTEEESSHHHHHHHH CS
          zf-C2H2   2 kCpdCgksFsrksnLkrHi 20 
                      +Cp C + F   ++L+rH 
  MA_8390711g0010 197 RCPVCRRIFVGLYELRRHF 215
                      7*****************6 PP
3zf-C2H210.90.0015228248323
                      ETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   3 CpdCgksFsrksnLkrHirtH 23 
                      C +Cgk F    +L+ H++++
  MA_8390711g0010 228 CRKCGKKFYIEVDLRDHQKLC 248
                      ******************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.16E-7136165No hitNo description
Gene3DG3DSA:3.30.160.605.8E-8136164IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.616140164IPR007087Zinc finger, C2H2
SMARTSM003553.4E-4140164IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280142164IPR007087Zinc finger, C2H2
SuperFamilySSF576671.01E-6196246No hitNo description
SMARTSM003551.1196219IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280198219IPR007087Zinc finger, C2H2
SMARTSM0035574226246IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.517226247IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    Send to blast
MGGYYPAFSL NNEVTSFYSI SDVQVSIPVA YDPFVWGEQE SNVPEADSSV FTANANAVSL  60
LCSQHCAINA PRMHPNLVST LKSIIDLDDN YQADRTGFVQ EKTAGERRHP SRRGDWKAAS  120
DQEDNIAAVP VDLIKDRRPF KCFYGGCSKT FKNPQTLKMH QKTHWSKGRY PAVENCNYSG  180
GQPPRTAAGH NKKIPSRCPV CRRIFVGLYE LRRHFGRKHS EGEKMHGCRK CGKKFYIEVD  240
LRDHQKLCGE PIECKCGIKF KCNLVAHKKS HPQCQDSYLT C
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024356411.12e-72zinc finger protein 850-like
TrEMBLB8LQV88e-83B8LQV8_PICSI; Uncharacterized protein
STRINGPP1S303_40V6.19e-72(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1095648
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50700.14e-10indeterminate(ID)-domain 2