PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MA_8356281g0010 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | MYB | ||||||||
Protein Properties | Length: 250aa MW: 28224.2 Da PI: 9.28 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 49.8 | 7.9e-16 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT+ Ed+ll ++++ +G g+W++ ++ g+ R++k+c++rw +yl MA_8356281g0010 14 RGPWTAREDLLLTKYIEAHGEGQWRALPKQAGLLRCGKSCRLRWMNYL 61 89******************************99************97 PP | |||||||
2 | Myb_DNA-binding | 53.4 | 6.1e-17 | 67 | 112 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+ T +E+el+v+++k+lG++ W++Ia +++ gRt++++k++w+++l MA_8356281g0010 67 RGNITLDEEELIVRLHKLLGNR-WSLIAGRLP-GRTDNEIKNFWNTHL 112 7899******************.*********.************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 13.844 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 7.42E-29 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.6E-12 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.0E-14 | 14 | 61 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.7E-23 | 15 | 68 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 5.02E-10 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 25.743 | 62 | 116 | IPR017930 | Myb domain |
SMART | SM00717 | 1.2E-15 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.2E-14 | 67 | 112 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.0E-25 | 69 | 116 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 4.30E-12 | 71 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 250 aa Download sequence Send to blast |
MGRAPCCSKV GLHRGPWTAR EDLLLTKYIE AHGEGQWRAL PKQAGLLRCG KSCRLRWMNY 60 LRPDIKRGNI TLDEEELIVR LHKLLGNRWS LIAGRLPGRT DNEIKNFWNT HLSKKLMMKG 120 IDPKTHQPAP ERIHKPRRLM KDNEDQETES FEHGMTEKDV ISSSGGKGVQ PIHLPKPNRY 180 IAFPRHLSHE ANVGITNTSV TNSDVQDVLL SPSIDLNSPC KNLQASVDSD HSSSGMLSDI 240 NPIHELGREV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 3e-25 | 12 | 116 | 5 | 108 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1 or BHLH042/TT8. {ECO:0000269|PubMed:15361138}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KU131224 | 0.0 | KU131224.1 Picea abies transcription factor MYB35 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007218760.1 | 4e-85 | myb-related protein 308 | ||||
Refseq | XP_009334363.1 | 5e-85 | PREDICTED: myb-related protein 308-like | ||||
Swissprot | Q38850 | 3e-70 | MYB5_ARATH; Transcription repressor MYB5 | ||||
TrEMBL | A0A167V936 | 0.0 | A0A167V936_PICAB; Transcription factor MYB35 | ||||
STRING | XP_009334363.1 | 2e-84 | (Pyrus x bretschneideri) | ||||
STRING | EMJ19959 | 2e-84 | (Prunus persica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13540.1 | 1e-72 | myb domain protein 5 |
Publications ? help Back to Top | |||
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