PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_83273g0010
Organism
Picea abies
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family ARR-B
Protein Properties Length: 557aa    MW: 61773.9 Da    PI: 6.164
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_83273g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like85.74.8e-27198250255
        G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                    +r++Wt +LH++Fv av+qL G++kA+Pk+i+e+mkv+gL++e+v+SHLQkYRl
  MA_83273g0010 198 ARVHWTVQLHQQFVVAVNQL-GIDKAVPKKIVEIMKVQGLSRENVASHLQKYRL 250
                    79******************.********************************8 PP
2Response_reg64.45.6e-22311391109
                    EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTE CS
   Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGa 94 
                    vlivdD+pl + +l+++l++ +y +v++++   +a+ ++ke++  +Dl+++ + +p+ +G++ll+ i   + +lp+i+++++g+ + + + +  Ga
  MA_83273g0010  31 VLIVDDDPLCLLVLERMLRQCNY-NVTTCSRVLQAISMVKENRdrFDLVMCEVYLPDEEGFRLLE-IVGLGLDLPVIMMSTNGDTSVVMKGITHGA 124
                    8**********************.***************999999******************97.6667789*********************** PP

                    SEEEESS--HHHHHH CS
   Response_reg  95 kdflsKpfdpeelvk 109
                     d++ Kp+ +eel++
  MA_83273g0010 125 CDYFIKPIRIEELRN 139
                    *************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0363924.7E-1248545IPR017053Response regulator B-type, plant
SuperFamilySSF521721.37E-3127149IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23001.5E-3428168No hitNo description
SMARTSM004482.6E-2529141IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011039.58930145IPR001789Signal transduction response regulator, receiver domain
PfamPF000721.2E-1931140IPR001789Signal transduction response regulator, receiver domain
CDDcd001563.49E-2332144No hitNo description
PROSITE profilePS512949.731194253IPR017930Myb domain
SuperFamilySSF466891.52E-18195254IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.1E-27196255IPR009057Homeodomain-like
TIGRFAMsTIGR015571.9E-23198250IPR006447Myb domain, plants
PfamPF002491.3E-5199249IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0009414Biological Processresponse to water deprivation
GO:0010082Biological Processregulation of root meristem growth
GO:0010380Biological Processregulation of chlorophyll biosynthetic process
GO:0031537Biological Processregulation of anthocyanin metabolic process
GO:0048367Biological Processshoot system development
GO:0080022Biological Processprimary root development
GO:0080036Biological Processregulation of cytokinin-activated signaling pathway
GO:0080113Biological Processregulation of seed growth
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 557 aa     Download sequence    Send to blast
MMDDESCAGK LAEECRSMLQ IENFSPTGLK VLIVDDDPLC LLVLERMLRQ CNYNVTTCSR  60
VLQAISMVKE NRDRFDLVMC EVYLPDEEGF RLLEIVGLGL DLPVIMMSTN GDTSVVMKGI  120
THGACDYFIK PIRIEELRNI WQHVVRRRGR ESLKDDLGEC EDREASDSPE TTSKKRKDTS  180
SGDFSDEVID DISSLKRARV HWTVQLHQQF VVAVNQLGID KAVPKKIVEI MKVQGLSREN  240
VASHLQKYRL YLKRLSGAIS EPYPVASFQA ADDSVSGGMM KLQQGEKGVT SSSGAKGLNL  300
GTGVSSSLGV RGLDQSTLKS LQQYRAYQQK LVANRAQILG GIGICPPNFS NTAKVPESMG  360
GSKSGLQRMS SVDMGLLWKA QREQAADENE KHGTANLQNL SQKKLNSSEQ RRFRGSHPRH  420
SRTRTLTDMP IVFQSAKPEV TFQNTPPAKS MLQDVDELLP MDDISWLDST FRPESPIDST  480
FRPESPRAAV ILFDNFVQDV GGSSHSAATT EESNRHAFAS TDCEGRKKAG VGNEDFFSSG  540
STDISDYLVD DLIPHPR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5lxu_A3e-19197253157Transcription factor LUX
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1228040.0BT122804.1 Picea sitchensis clone WS0461_G14 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
SwissprotB8AEH15e-90ORR23_ORYSI; Two-component response regulator ORR23
SwissprotQ6K8X66e-90ORR23_ORYSJ; Two-component response regulator ORR23
TrEMBLD5A9D60.0D5A9D6_PICSI; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP29217120
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16857.14e-87response regulator 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]