PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MA_83118g0010 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | ERF | ||||||||
Protein Properties | Length: 248aa MW: 27881.1 Da PI: 6.6478 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 56.6 | 6.4e-18 | 18 | 68 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 y+GVr++ +g+WvAeIr p++ r+r +lg+f tae Aa a+++a+ +++ge MA_83118g0010 18 LYRGVRQRQ-WGKWVAEIRLPRN---RTRLWLGTFETAEAAALAYDRAAYQWRGE 68 59****999.**********955...5************************9997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.13E-19 | 17 | 77 | No hit | No description |
SuperFamily | SSF54171 | 2.35E-22 | 18 | 76 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 4.3E-34 | 18 | 81 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.3E-30 | 18 | 76 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.945 | 18 | 75 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.7E-11 | 19 | 30 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.4E-12 | 19 | 68 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.7E-11 | 41 | 57 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 248 aa Download sequence Send to blast |
MEKRDKCAIA ARQPMKKLYR GVRQRQWGKW VAEIRLPRNR TRLWLGTFET AEAAALAYDR 60 AAYQWRGECA RLNFPHLFSK NCQESYISLT SGRSPRHYSE SSDQKYAYNS GSVHMNACKG 120 DPVRTTAYNG DPVQINVYKS DPVQISAHSG NAVGKVASLA EFMPESSSSH ESPNAQVERF 180 VWEEGEDENW LNNLPVLEAD MTWDVLNGCS DLGTEGSQTR TCALQTENAC ISSGKFEFQG 240 VWLGCCCE |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 2e-20 | 17 | 75 | 1 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EF082918 | 0.0 | EF082918.1 Picea sitchensis clone WS02722_I04 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A9NNQ8 | 1e-166 | A9NNQ8_PICSI; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G22200.1 | 5e-25 | ERF family protein |