PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MA_8255g0010 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | bHLH | ||||||||
Protein Properties | Length: 489aa MW: 55866.3 Da PI: 8.7466 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 47.9 | 2.5e-15 | 275 | 317 | 8 | 55 |
HHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 8 rErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +ErrRR++iN +f Lr+++P +K +K +iL +A+eY+k+Lq MA_8255g0010 275 AERRRRNKINRKFKILRSIIPFV-----TKTNKESILGEAIEYLKHLQ 317 7*********************8.....8******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF14215 | 2.2E-28 | 19 | 147 | IPR025610 | Transcription factor MYC/MYB N-terminal |
PROSITE profile | PS50888 | 15.18 | 267 | 316 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 2.09E-16 | 273 | 334 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.8E-15 | 273 | 322 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.9E-16 | 274 | 331 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.2E-12 | 275 | 317 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 489 aa Download sequence Send to blast |
MASNRSDLTT IHGRNIRLLL QAVVRSTQWT YSIFWRFSPS KGLLVWREGF YNGDVERSFQ 60 LRELFHSLKS EEEINQPSSK QCVALSTEDL TDTDWFYLFS MSFDFAPAKC LPGRALANRY 120 PVWLSRANEV EARVFSRALL AKSAGIQVPE DPGLIEHVKS FFLDDAQQVI TSETSSSQIS 180 SDFTAAEDFI QTSGSIESNM SEDITTGSPH GQKRRNCGWS EYCKGGAFSK WIEKGNPVMR 240 KEPPLASSQS RLKNKLRQGE EDSDLTDVNR DSVLAERRRR NKINRKFKIL RSIIPFVTKT 300 NKESILGEAI EYLKHLQRRV LELESHKKQT EVDHNGFQEQ NPIDGAIIDK QDEELSDEKH 360 FSRVKKLRDA NDQLKSLRMD KRKVRVVEGS ATSPMETGEG SMAEIEVSIN DEKALLQLKC 420 CWKKGLLLQI LQTLSSFHLE IYESQSSRVQ HNYFVATIKA IVIQQVGQTR NGQRETIARV 480 KEAIQRVIL |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT109812 | 0.0 | BT109812.1 Picea glauca clone GQ03212_K19 mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A167V975 | 1e-126 | A0A167V975_PICAB; Transcription factor bHLH-3 |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP557 | 16 | 78 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G09820.1 | 3e-40 | bHLH family protein |