PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_81876g0010
Organism
Picea abies
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family C2H2
Protein Properties Length: 539aa    MW: 58890.1 Da    PI: 5.9295
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_81876g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.36.2e-06317338223
                    EETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                     C++Cgk F+r  n + H+r H
  MA_81876g0010 317 FCEICGKGFRRDANVRMHMRAH 338
                    6*******************99 PP
2zf-C2H214.78.8e-05409431123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    y+C++C+k Fs   +Lk+H +++
  MA_81876g0010 409 YTCNKCNKQFSVVGDLKTHGKNC 431
                    9******************9985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.88E-5313341No hitNo description
PROSITE profilePS5015711.926316343IPR007087Zinc finger, C2H2
SMARTSM003550.011316338IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.2E-5318344IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280318338IPR007087Zinc finger, C2H2
SMARTSM0035543371404IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.606.9E-4407427IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576679.34E-5407454No hitNo description
PROSITE profilePS501579.764409433IPR007087Zinc finger, C2H2
SMARTSM003557.1409433IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280411433IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 539 aa     Download sequence    Send to blast
MADDSARLLE IVAMNTARAG HQGFKRVDPR FDPDRVREEG FFAEGSNTSR STEYHAGEGF  60
RGGQLQALSD LHQEEAAGNG GQYFDWPQPA STSEGLLQGS SNNLGAWPAM AAGLSSGAQA  120
QTNTNLLAQA QTDTNLLLEN LSVLQQKAQQ LEAVVQEGHH DQPASGVISS ILYELIQKAQ  180
QLEAVVQEGH HDQPASGVIS SILYELIVTA ASVLFSVQNR GIANPESAEV QPVPDTAACV  240
EIQAENRPLP VGVGFGKPPN PNGASDVGFA GGIDLQDEKS PVDIKAEGEE EEASPDDRFY  300
EIIEINEDDI LAEHTHFCEI CGKGFRRDAN VRMHMRAHGD EYKTNQALMS RPPDQANKLP  360
AASFSPTARR YSCPFERCRR NKNHRKFKPL KSIASLRNHY KRSHCPKMYT CNKCNKQFSV  420
VGDLKTHGKN CGHNRWQCSC GTTFTRKDKL FGHVGLFEGH RPVLPSGEAA AKSEEENRTP  480
GNGNRPDFFV GDPAGLVNKS QSYGNSCSDE QLFRAGSSQQ NDIDGRFCQS DVFWAGFSG
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1229450.0BT122945.1 Picea sitchensis clone WS0463_G20 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLD5A9S20.0D5A9S2_PICSI; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP8301663
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34370.23e-77C2H2 family protein