PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MA_81763g0010 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | MYB | ||||||||
Protein Properties | Length: 235aa MW: 26502.9 Da PI: 7.2914 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 50.3 | 5.3e-16 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++l+++++ +G g+W++ ++ g+ R++k+c+ rw ++l MA_81763g0010 14 KGAWTKEEDDRLIQYIQVHGEGCWRSLPKAAGLLRCGKSCRMRWINFL 61 79******************************99***********996 PP | |||||||
2 | Myb_DNA-binding | 53.7 | 4.8e-17 | 68 | 112 | 2 | 48 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 g+++++Ed+l+++++++lG++ W++Ia +++ gRt++++k++w+++l MA_81763g0010 68 GNFSEDEDDLILKLHALLGNK-WSLIAGRLP-GRTDNEIKNYWNSHL 112 79*******************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.6E-22 | 5 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 15.716 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.88E-29 | 12 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.5E-12 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.0E-14 | 14 | 60 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.64E-10 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 25.577 | 62 | 116 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.5E-25 | 65 | 117 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.9E-15 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 8.2E-16 | 68 | 112 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.25E-12 | 69 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 235 aa Download sequence Send to blast |
MGRAPCCPNG DRNKGAWTKE EDDRLIQYIQ VHGEGCWRSL PKAAGLLRCG KSCRMRWINF 60 LRPHLKQGNF SEDEDDLILK LHALLGNKWS LIAGRLPGRT DNEIKNYWNS HLQRKLISMG 120 IDPLTHRAFQ KNSLHYRSLP RDDTEPEITS SHEVVHDFFH CPSELSVASE QVSNAASGLA 180 RDGHPDLNLN LDLGLSITGP SIQAVRKENV VNSEEGESDL SEGKGYLVYP LLRLR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 4e-29 | 9 | 116 | 22 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription repressor involved in regulation of protection against UV. Mediates transcriptional repression of CYP73A5, the gene encoding trans-cinnamate 4-monooxygenase, thereby regulating the accumulation of the UV-protectant compound sinapoylmalate. {ECO:0000269|PubMed:11080161}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Down-regulated by exposure to UV-B light. {ECO:0000269|PubMed:11080161}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT118444 | 0.0 | BT118444.1 Picea glauca clone GQ04006_H12 mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002315890.3 | 2e-81 | myb-related protein 308 | ||||
Swissprot | Q9SZP1 | 7e-79 | MYB4_ARATH; Transcription repressor MYB4 | ||||
TrEMBL | A9NTK0 | 1e-125 | A9NTK0_PICSI; Uncharacterized protein | ||||
STRING | POPTR_0010s12420.1 | 9e-80 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38620.1 | 3e-81 | myb domain protein 4 |