PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MA_8171097g0010

Organism

Picea abies

Taxonomic ID

3329

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea

Family

CPP

Protein Properties

Length: 413aa MW: 44748.8 Da PI: 9.2501

Description

CPP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MA_8171097g0010	genome	ConGenIE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCR	50.4	4.5e-16	302	340	3	41
TCR 3 kkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 +k+CnCkkskClk+YCeCfaag++C e C+C++C+Nk e MA_8171097g0010 302 CKRCNCKKSKCLKLYCECFAAGVYCVEPCTCQECFNKPE 340 89**********************************976 PP
2	TCR	24.7	4.6e-08	384	404	1	21
TCR 1 kekkgCnCkkskClkkYCeCf 21 ++k+gCnCkks ClkkYCeC+ MA_8171097g0010 384 RHKRGCNCKKSMCLKKYCECW 404 589*****************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01114	4.5E-16	300	341	IPR033467	Tesmin/TSO1-like CXC domain
PROSITE profile	PS51634	27.021	301	413	IPR005172	CRC domain
Pfam	PF03638	5.7E-12	303	338	IPR005172	CRC domain
SMART	SM01114	0.033	384	408	IPR033467	Tesmin/TSO1-like CXC domain

Sequence ? help Back to Top
Protein Sequence Length: 413 aa Download sequence Send to blast
MQPGNQSQRG IRRRCLDFEA SEAQRKTMSN RSWNSTSLMP KTDVLVNSAH DSDTNTSSSV 60 SCEKGVTSDC KQIVPLKRET GADIGRISQS SANVRFSSFS SKSTELTSDK SDSNIRNNGN 120 TPISVGIPSG IGLHLNSLAT TMPLNSGVNM LTSAKGSVST QGMSPSSGVK ETSSDVVGSS 180 LPSVNSGGNI SVGTNSNIAS GMVVSMVEKT RIDQQELQSS GMTQIGVTRS TTCFRSVTVG 240 IKPLQSRLPF KSEERNLSPL GKKRPALLDI SQQSPFGIGE EFSQSSPKKK RKSTTIGDKE 300 GCKRCNCKKS KCLKLYCECF AAGVYCVEPC TCQECFNKPE YEDMVLGTRQ QIESRNPLAF 360 APKIVRGADS PPTNGCGETP SSARHKRGCN CKKSMCLKKY CECWCWLLRW LQM

Sequence ? help Back to Top

Protein Sequence Length: 413 aa Download sequence Send to blast

MQPGNQSQRG IRRRCLDFEA SEAQRKTMSN RSWNSTSLMP KTDVLVNSAH DSDTNTSSSV  60
SCEKGVTSDC KQIVPLKRET GADIGRISQS SANVRFSSFS SKSTELTSDK SDSNIRNNGN  120
TPISVGIPSG IGLHLNSLAT TMPLNSGVNM LTSAKGSVST QGMSPSSGVK ETSSDVVGSS  180
LPSVNSGGNI SVGTNSNIAS GMVVSMVEKT RIDQQELQSS GMTQIGVTRS TTCFRSVTVG  240
IKPLQSRLPF KSEERNLSPL GKKRPALLDI SQQSPFGIGE EFSQSSPKKK RKSTTIGDKE  300
GCKRCNCKKS KCLKLYCECF AAGVYCVEPC TCQECFNKPE YEDMVLGTRQ QIESRNPLAF  360
APKIVRGADS PPTNGCGETP SSARHKRGCN CKKSMCLKKY CECWCWLLRW LQM

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5fd3_A	4e-13	303	404	12	103	Protein lin-54 homolog
5fd3_B	4e-13	303	404	12	103	Protein lin-54 homolog

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	286	292	PKKKRKS

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT123813	0.0	BT123813.1 Picea sitchensis clone WS04717_J09 unknown mRNA.

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP993	17	55

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G14770.1	1e-58	TESMIN/TSO1-like CXC 2