PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MA_8069842g0010 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | MYB | ||||||||
Protein Properties | Length: 500aa MW: 55410.5 Da PI: 5.3132 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 41.7 | 2.6e-13 | 26 | 75 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT..-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg..tWktIartmgkgRtlkqcksrwqkyl 48 +g W++eEde+l+ +++ G+ +W +a+ g+ R++k+c++rw +yl MA_8069842g0010 26 KGLWSPEEDEKLIAYIANNGMVgcSWGYVAKQAGLQRCGKSCRLRWINYL 75 678*****************9999************************97 PP | |||||||
2 | Myb_DNA-binding | 41 | 4.4e-13 | 81 | 124 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg ++ +E+ l++++ G++ W+ Ia+ ++ gRt++++k++w++ MA_8069842g0010 81 RGVFSHQEERLIINLQSIIGNR-WSQIAAQIP-GRTDNEIKNYWNS 124 899*******************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 14.582 | 21 | 75 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 8.03E-25 | 23 | 122 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 9.6E-8 | 25 | 77 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.8E-11 | 26 | 75 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.4E-20 | 27 | 82 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.87E-7 | 29 | 75 | No hit | No description |
PROSITE profile | PS51294 | 22.584 | 76 | 130 | IPR017930 | Myb domain |
SMART | SM00717 | 4.8E-13 | 80 | 128 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.2E-11 | 81 | 124 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 9.1E-23 | 83 | 131 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.05E-8 | 84 | 123 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 500 aa Download sequence Send to blast |
MRCTLGQGQG IQEDFPLPPS KPKLRKGLWS PEEDEKLIAY IANNGMVGCS WGYVAKQAGL 60 QRCGKSCRLR WINYLRPGLK RGVFSHQEER LIINLQSIIG NRWSQIAAQI PGRTDNEIKN 120 YWNSTIKRKL KLKHHLSSST TNCNTNDKSN IHSQSDRISN TNSVFSHANY ALTSSDSSQP 180 YLDAMPEGCQ TANNTLNVVT PGENQFRVAD VLELKQEQVQ DQSDEINQLV SYFETWINDT 240 STHTHQSVSS HEAFISPSLQ TQGLHTYNTA KSSTCDELII DACSTTVQPL EASASANYSL 300 VSTGITIPAV FGRECLKAKN ENDGWSTSHS YSSADDWSHV VDPGAYITHE AGISIVEEYK 360 SLYEKNTHQS WPLLSFRSQF GEPEIKCPRG QSNDFKAADD CKDSLDFIYD VNLGIPKYIG 420 NCSRQKSYQL PQIDGGEGDF KIISHEEPKA NPTPTILAGG SAPLEIECKG VAGQVTVWVD 480 DDIYSLSTAA ASDLDEIYFG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 1e-26 | 22 | 130 | 3 | 108 | B-MYB |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT117231 | 0.0 | BT117231.1 Picea glauca clone GQ03815_G02 mRNA sequence. |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G01680.3 | 2e-50 | myb domain protein 55 |