PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MA_79692g0010 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | LBD | ||||||||
Protein Properties | Length: 164aa MW: 18482.8 Da PI: 4.6663 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 94.8 | 9.2e-30 | 22 | 117 | 5 | 100 |
DUF260 5 CkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100 Ck+ +++C ++C++ f++++ +kf ++h++FGa nv+kl+++lp ++r da++s+vyeA ar++dPv G+vg i+klq q++ l++++ ++++ MA_79692g0010 22 CKMEQKDCLENCTILYSFASNDLHKFSILHQVFGACNVIKLVQDLPSDQRVDAINSMVYEASARLQDPVFGCVGKIQKLQLQISDLQSQITATQST 117 *****************************************************************************************9998875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 19.127 | 17 | 118 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.6E-28 | 21 | 115 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 164 aa Download sequence Send to blast |
MMSNAKEKPR TQSSSAAFHD HCKMEQKDCL ENCTILYSFA SNDLHKFSIL HQVFGACNVI 60 KLVQDLPSDQ RVDAINSMVY EASARLQDPV FGCVGKIQKL QLQISDLQSQ ITATQSTIQK 120 IRSQRTQLLD CIPGFKNRDN PTICTSLNED DEEDQDLLDS DLID |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 1e-26 | 11 | 120 | 4 | 113 | LOB family transfactor Ramosa2.1 |
5ly0_B | 1e-26 | 11 | 120 | 4 | 113 | LOB family transfactor Ramosa2.1 |
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Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT110243 | 0.0 | BT110243.1 Picea glauca clone GQ03218_K02 mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A9P1U3 | 4e-65 | A9P1U3_PICSI; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP60 | 16 | 318 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07900.1 | 6e-27 | LOB domain-containing protein 1 |