PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_795128g0010
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family C2H2
Protein Properties Length: 382aa    MW: 42929.1 Da    PI: 6.681
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_795128g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.46.1e-06219238120
                     EEETTTTEEESSHHHHHHHH CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                     ++C  Cgk+F+r  n++ H+
  MA_795128g0010 219 FSCAVCGKTFNRYNNMQMHM 238
                     89*****************9 PP

2zf-C2H2120.00064303325123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     + C +C+k F  + + ++H +++
  MA_795128g0010 303 FACRKCSKAFAVRGDWRTHEKNC 325
                     78*****************9987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.79E-5212241No hitNo description
PROSITE profilePS5015710.887219246IPR007087Zinc finger, C2H2
SMARTSM003550.22219241IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.603.9E-5219238IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280221241IPR007087Zinc finger, C2H2
SuperFamilySSF576671.23E-5289323No hitNo description
Gene3DG3DSA:3.30.160.604.0E-5290323IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM0035578303323IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 382 aa     Download sequence    Send to blast
MQRKRPLEME MMMKSRSYQY SQSSMAVPPS ISFHRLPLGE WINPQFVMDP SVSQLPSGIP  60
FIYDHGIVSL NNQPESVNSP LQCLPCHHPA VSMIPRTYSA AVDEELKDHE EEEEEEPFLS  120
LRPPGQTEAA IKNNSTSSSS HPSSYITDQD DSDDNVTVAL RIGLPNSELR ECRSEGAGEY  180
NDAVSMSPDD GCFQTGEKLA EGQYWIPTPA QILVGPTQFS CAVCGKTFNR YNNMQMHMWG  240
HGSQYRKGPD SLRGTKPSAI LRLPCYCCAP GCRNNIHHPR SKPLKDFRTL QTHYKRKHGM  300
KPFACRKCSK AFAVRGDWRT HEKNCGKLWF CTCGSDFKHK RSLKDHIRAF GNGHAPHGVE  360
TCEDDDDTPS EEVDDDYSGG SH
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269|PubMed:17600712, ECO:0000269|PubMed:23515580, ECO:0000269|PubMed:25039392}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024385058.11e-130zinc finger protein WIP6-like
RefseqXP_024385059.11e-130zinc finger protein WIP6-like
SwissprotQ9SVY11e-111ZWIP2_ARATH; Zinc finger protein WIP2
TrEMBLA0A2K1K4711e-129A0A2K1K471_PHYPA; Uncharacterized protein
STRINGPP1S203_59V6.11e-130(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP4101597
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57670.11e-110C2H2 family protein
Publications ? help Back to Top
  1. Crawford BC, et al.
    Plant development. Genetic control of distal stem cell fate within root and embryonic meristems.
    Science, 2015. 347(6222): p. 655-9
    [PMID:25612610]
  2. Boex-Fontvieille E, et al.
    An Ethylene-Protected Achilles' Heel of Etiolated Seedlings for Arthropod Deterrence.
    Front Plant Sci, 2016. 7: p. 1246
    [PMID:27625656]