PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MA_79012g0010 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | MYB_related | ||||||||
Protein Properties | Length: 361aa MW: 39428.5 Da PI: 7.7109 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 42.1 | 2e-13 | 86 | 130 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE+ ++ + ++ G+g+W+ I+r + k+Rt+ q+ s+ qky MA_79012g0010 86 PWTEEEHRMFLVGLQKVGKGDWRGISRNFVKTRTPTQVASHAQKY 130 8*******************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50158 | 8.515 | 5 | 18 | IPR001878 | Zinc finger, CCHC-type |
PROSITE profile | PS51294 | 18.444 | 79 | 135 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.12E-17 | 81 | 136 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.8E-17 | 82 | 134 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 4.5E-10 | 83 | 133 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.2E-11 | 85 | 129 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.5E-10 | 86 | 130 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 5.77E-9 | 86 | 131 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 361 aa Download sequence Send to blast |
MSRSCSQCGH NGHNSRTCVG NAVMLFGVRL TDGPMRKSVS MNNLSNLSQY EHSDPAEDGA 60 EGFDGYVSDD LVHSSSNARE RKRGVPWTEE EHRMFLVGLQ KVGKGDWRGI SRNFVKTRTP 120 TQVASHAQKY FLRQSNMNRR RRRSSLFDIT TDTFLSLPVE EDLVPGTGNP LPFPSQLSLG 180 QSSSFPAPEA GNFAIPVTSF PVPLSHVVLP GLPVGKPHEL EKQQEFTPMD CSENPESSPM 240 ALTSEAAMDA SVSHPNFMDV PPPPHYRIWN PALPFPSVEI SATAGSKLVK PIPIIPTPPL 300 KTAESTKKIA TSSQKPVMEP SPLSLKLSEQ SKRHSAFQSM TSLSSHEMES QGNLGNVISV 360 A |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT101441 | 0.0 | BT101441.1 Picea glauca clone GQ01304_K02 mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010272144.1 | 2e-87 | PREDICTED: transcription factor MYB1R1-like | ||||
TrEMBL | B8LLJ2 | 0.0 | B8LLJ2_PICSI; Uncharacterized protein | ||||
STRING | XP_010272144.1 | 6e-87 | (Nelumbo nucifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP394 | 16 | 99 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G70000.2 | 6e-67 | MYB_related family protein |