PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MA_76643g0010 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | MYB_related | ||||||||
Protein Properties | Length: 365aa MW: 40215.8 Da PI: 5.5908 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 47.2 | 5e-15 | 15 | 55 | 6 | 48 |
HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 6 teEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +eE++l+++++++lG++ W++Ia +++ gRt++++k++w+++l MA_76643g0010 15 PEEEDLILRLHRLLGNR-WALIAGRIP-GRTDNEIKNYWNTHL 55 7****************.*********.************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.8E-22 | 1 | 60 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 7.18E-13 | 1 | 62 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 23.337 | 5 | 59 | IPR017930 | Myb domain |
SMART | SM00717 | 4.5E-14 | 9 | 57 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.56E-12 | 15 | 55 | No hit | No description |
Pfam | PF00249 | 6.3E-14 | 15 | 55 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 365 aa Download sequence Send to blast |
MNYLRPDVKC GHILPEEEDL ILRLHRLLGN RWALIAGRIP GRTDNEIKNY WNTHLRKKLI 60 SQGIDPRTHK HLSESKDKGS NPGDGETSQK SQRENNTTIP ARNIAESRAD LQAVPSKGEG 120 AITVHCNKDD SKTTTGPANN ANQLPETSPT CNPQPASVAI NCSPQSSGIS STPYSFEEST 180 FSNSNMESRK IPYPPSLPTC FDSLALRGIG RYDLDPYLMK NPVKNSNDMI MSTLRLRSGL 240 QAAPFVGQFD SNQDFISGNA FLNNEKHQMS LQASDVPTSY AVPDEVTGMT YPYHISPSSV 300 AAALGDFNPD IFHALLESVV YEELQLRQPG AHTSVEQNVE RCPLSQPEAS DLTDDLWSML 360 FASSV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 1e-13 | 2 | 59 | 48 | 105 | MYB PROTO-ONCOGENE PROTEIN |
1mse_C | 1e-13 | 2 | 59 | 48 | 105 | C-Myb DNA-Binding Domain |
1msf_C | 1e-13 | 2 | 59 | 48 | 105 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | B8LNN4 | 1e-123 | B8LNN4_PICSI; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13540.1 | 1e-37 | myb domain protein 5 |