PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_75731g0010
Organism
Picea abies
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family LBD
Protein Properties Length: 269aa    MW: 29946.8 Da    PI: 8.3014
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_75731g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26085.11e-264102194
         DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlk 91 
                    +C++C+vlr++C+++C+l+p++     +++q++++ +++k++G++ +++l+++ pe+ r+++++sl+ye++ r+ +P+yG++g++ ++ +  +q++
  MA_75731g0010   4 SCNGCRVLRKGCSESCILRPCLhwistAESQANATIFLAKFYGRAGLVNLISSGPEHLRPAIFRSLLYESCGRMVNPIYGSLGLLCSGDWAECQAR 99 
                    6*********************9999778899**************************************************************99 PP

         DUF260  92 ael 94 
                    +e+
  MA_75731g0010 100 VET 102
                    886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089115.7183109IPR004883Lateral organ boundaries, LOB
PfamPF031951.7E-214102IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    Send to blast
MRKSCNGCRV LRKGCSESCI LRPCLHWIST AESQANATIF LAKFYGRAGL VNLISSGPEH  60
LRPAIFRSLL YESCGRMVNP IYGSLGLLCS GDWAECQARV ETILRGSFRA VPQGDKASRL  120
RPVEAIARAV RRTRARSRVK GLSSGEHKEK EGECEAIGNH MDSTSKSDHG GCLINTFKNA  180
DNGNLREKYE EKYSTLPGQE QEQFVAAQPQ TQYYHDLCNL KITQSEIPCN AVELELTLGS  240
HGSSPRTPDK VSAGDHRWSE AHWDQFMEK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027097963.11e-57LOB domain-containing protein 40-like
RefseqXP_027100762.11e-57LOB domain-containing protein 40-like
RefseqXP_027154651.11e-57LOB domain-containing protein 40-like
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP4031699
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67100.13e-59LOB domain-containing protein 40