PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_75192g0010
Organism
Picea abies
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family NAC
Protein Properties Length: 318aa    MW: 36083.8 Da    PI: 9.1268
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_75192g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM169.41.2e-52141411128
            NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk. 95 
                    lppGfrF Ptdeel+v+yL+k+v+++++++  +i+e+d+yk++Pw+Lp+k+  +ekewyfFs+rd+ky++g+r+nra+ sgyWkatg+dk+v++  
  MA_75192g0010  14 LPPGFRFYPTDEELMVHYLCKRVASQPFPI-PIIAEIDLYKFDPWQLPEKALFGEKEWYFFSPRDRKYPNGSRPNRAAGSGYWKATGTDKPVTAGl 108
                    79****************************.88***************8888899**************************************988 PP

            NAM  96 kgelvglkktLvfykgrapkgektdWvmheyrl 128
                    ++ +vg+kk Lvfykg+ap+g+kt+W+mheyrl
  MA_75192g0010 109 NRMKVGVKKALVFYKGKAPRGVKTNWIMHEYRL 141
                    8999***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.09E-6510168IPR003441NAC domain
PROSITE profilePS5100561.79914168IPR003441NAC domain
PfamPF023651.9E-2615141IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    Send to blast
MGCKSGPNSA QINLPPGFRF YPTDEELMVH YLCKRVASQP FPIPIIAEID LYKFDPWQLP  60
EKALFGEKEW YFFSPRDRKY PNGSRPNRAA GSGYWKATGT DKPVTAGLNR MKVGVKKALV  120
FYKGKAPRGV KTNWIMHEYR LADSASRAAK RKGSIRLDDW VLCRIYEKHY ASQKAVPKES  180
NELSSCVDPE EDQYMAPVAS NSPPDMDDNK LLINLPRINS LNRINSLLKF PSREIMKMPD  240
PNYNQTEQQY SRAETDAGSN SGGQAIEYGQ NSPFWRNQQF GYNYDQMAQN PFPQQLEHMP  300
SLGANSSAFF ASLAAELL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-8411744171NO APICAL MERISTEM PROTEIN
1ut4_B3e-8411744171NO APICAL MERISTEM PROTEIN
1ut7_A3e-8411744171NO APICAL MERISTEM PROTEIN
1ut7_B3e-8411744171NO APICAL MERISTEM PROTEIN
4dul_A3e-8411744171NAC domain-containing protein 19
4dul_B3e-8411744171NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in stress response. {ECO:0000250|UniProtKB:Q7F2L3}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt stress (PubMed:18813954, PubMed:20632034). Induced by dehydration, cold stress and methyl jasmonate (PubMed:20632034). {ECO:0000269|PubMed:18813954, ECO:0000269|PubMed:20632034}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF0831840.0EF083184.1 Picea sitchensis clone WS02727_G15 unknown mRNA.
GenBankEF0841490.0EF084149.1 Picea sitchensis clone WS0284_M11 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020699020.16e-92NAC domain-containing protein 68
RefseqXP_024392980.14e-91NAC transcription factor 47-like
RefseqXP_024392981.14e-91NAC transcription factor 47-like
SwissprotQ52QH45e-88NAC68_ORYSJ; NAC domain-containing protein 68
TrEMBLA9NPH40.0A9NPH4_PICSI; Uncharacterized protein
STRINGPP1S5_359V6.11e-90(Physcomitrella patens)
STRINGEFJ078413e-91(Selaginella moellendorffii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1715800
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27410.26e-88NAC family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Taga Y, et al.
    Role of OsHSP90 and IREN, Ca2+ dependent nuclease, in plant hypersensitive cell death induced by transcription factor OsNAC4.
    Plant Signal Behav, 2009. 4(8): p. 740-2
    [PMID:19820348]
  3. Xia N, et al.
    Characterization of a novel wheat NAC transcription factor gene involved in defense response against stripe rust pathogen infection and abiotic stresses.
    Mol. Biol. Rep., 2010. 37(8): p. 3703-12
    [PMID:20213512]
  4. Takasaki H, et al.
    The abiotic stress-responsive NAC-type transcription factor OsNAC5 regulates stress-inducible genes and stress tolerance in rice.
    Mol. Genet. Genomics, 2010. 284(3): p. 173-83
    [PMID:20632034]
  5. Nakayama A, et al.
    Genome-wide identification of WRKY45-regulated genes that mediate benzothiadiazole-induced defense responses in rice.
    BMC Plant Biol., 2013. 13: p. 150
    [PMID:24093634]
  6. Ootsubo Y,Hibino T,Wakazono T,Mukai Y,Che FS
    IREN, a novel EF-hand motif-containing nuclease, functions in the degradation of nuclear DNA during the hypersensitive response cell death in rice.
    Biosci. Biotechnol. Biochem., 2016. 80(4): p. 748-60
    [PMID:26766411]