PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MA_74833g0010

Organism

Picea abies

Taxonomic ID

3329

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea

Family

WRKY

Protein Properties

Length: 731aa MW: 79109.5 Da PI: 6.376

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MA_74833g0010	genome	ConGenIE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	95.1	4.9e-30	353	412	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 ++Dg++WrKYGqK kg+++pr+YYrCt a gC v+k+v+r+aed +++++tYeg+Hnh+ MA_74833g0010 353 MNDGCQWRKYGQKIAKGNPCPRAYYRCTVAaGCLVRKQVQRCAEDMSILITTYEGTHNHP 412 58*************************99**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	2.5E-31	338	414	IPR003657	WRKY domain
SuperFamily	SSF118290	3.27E-27	346	414	IPR003657	WRKY domain
PROSITE profile	PS50811	29.367	348	414	IPR003657	WRKY domain
SMART	SM00774	1.8E-36	353	413	IPR003657	WRKY domain
Pfam	PF03106	2.6E-26	354	412	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 731 aa Download sequence Send to blast
MEADRSGSDV IHTSKRKSPF GLESINSNPN PGKKMAMEGR SDKVREIDLS VKLEAENSER 60 HEDSELEFKT EKIISPLVYH LDPTEEEEAE AEETSKELHG NYYYDKPTSS RVPTPVTSWI 120 DEQTKIEALQ IEMGRIKEEN ENLKMELSQG IKNYQNLHMH VFSVMQQRRE NNEKLREQEL 180 QRPQDESQLV ALSLCTNPST KERSKEETTG TAETGKLQLI ENQGRHVKSS SVDGGSVENL 240 KGLNLSLDIK DDETSRESGE GNLSPRSGSP TRSEGGLVKT NYVDLSNGEP QACVSPENSS 300 QLKDENISQQ EGGSWPPNKT MKASDETAKN SEAAPLTKKA RVSVRARCDA PTMNDGCQWR 360 KYGQKIAKGN PCPRAYYRCT VAAGCLVRKQ VQRCAEDMSI LITTYEGTHN HPLPIAATAM 420 ASTTSAAASM LLSGSTSSLE AMNANSYFLG AANSRMGQFL ASNPHITTST NSFPSIVFDL 480 TNNPSSQPNL RLGASGSAGT PLATSFPSPF RYPSAGPSLI SHNSSIMGSG HYLTPPSGSN 540 LWNNNVYSSQ PHHAYSKHSP LGTKYDLATQ QLQQPPPPID PSRAIQGALS RSSTQTLMQN 600 LLAEAAAKSN NPSGSQHSLA DTVGAATAAI TSDPNFTAAL ANAITSIISQ GTTQSQSGAL 660 NDRALISANN DQLSGPGKWK ESMLALYATV NAASSRASPH QVSQSNGIFS STSFPFSTKQ 720 WPAATMDYQN L

Sequence ? help Back to Top

Protein Sequence Length: 731 aa Download sequence Send to blast

MEADRSGSDV IHTSKRKSPF GLESINSNPN PGKKMAMEGR SDKVREIDLS VKLEAENSER  60
HEDSELEFKT EKIISPLVYH LDPTEEEEAE AEETSKELHG NYYYDKPTSS RVPTPVTSWI  120
DEQTKIEALQ IEMGRIKEEN ENLKMELSQG IKNYQNLHMH VFSVMQQRRE NNEKLREQEL  180
QRPQDESQLV ALSLCTNPST KERSKEETTG TAETGKLQLI ENQGRHVKSS SVDGGSVENL  240
KGLNLSLDIK DDETSRESGE GNLSPRSGSP TRSEGGLVKT NYVDLSNGEP QACVSPENSS  300
QLKDENISQQ EGGSWPPNKT MKASDETAKN SEAAPLTKKA RVSVRARCDA PTMNDGCQWR  360
KYGQKIAKGN PCPRAYYRCT VAAGCLVRKQ VQRCAEDMSI LITTYEGTHN HPLPIAATAM  420
ASTTSAAASM LLSGSTSSLE AMNANSYFLG AANSRMGQFL ASNPHITTST NSFPSIVFDL  480
TNNPSSQPNL RLGASGSAGT PLATSFPSPF RYPSAGPSLI SHNSSIMGSG HYLTPPSGSN  540
LWNNNVYSSQ PHHAYSKHSP LGTKYDLATQ QLQQPPPPID PSRAIQGALS RSSTQTLMQN  600
LLAEAAAKSN NPSGSQHSLA DTVGAATAAI TSDPNFTAAL ANAITSIISQ GTTQSQSGAL  660
NDRALISANN DQLSGPGKWK ESMLALYATV NAASSRASPH QVSQSNGIFS STSFPFSTKQ  720
WPAATMDYQN L

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	4e-19	344	414	8	77	Probable WRKY transcription factor 4
2ayd_A	5e-19	340	414	1	74	WRKY transcription factor 1
2lex_A	4e-19	344	414	8	77	Probable WRKY transcription factor 4

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP14	17	875

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G15130.1	2e-50	WRKY DNA-binding protein 72