PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MA_73502g0010 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | MYB | ||||||||
Protein Properties | Length: 327aa MW: 37232.7 Da PI: 5.0704 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 47.4 | 4.4e-15 | 22 | 67 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +g+WT eEd +l ++++++G g+W+ +a+ g++Rt+ +c++rw + MA_73502g0010 22 KGPWTVEEDMQLTEYIRLHGEGRWSFVAKGAGLKRTGRSCRLRWVN 67 79******************************************87 PP | |||||||
2 | Myb_DNA-binding | 44.2 | 4.4e-14 | 75 | 118 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 r + T+eE+ l+++++ ++G++ W+ Iar ++ gRt+++ k++w++ MA_73502g0010 75 RSKITPEEERLIIELHDRWGNR-WSHIARSLP-GRTDNETKNYWRT 118 6788******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 15.364 | 17 | 69 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.67E-29 | 21 | 116 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.0E-14 | 21 | 71 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.8E-14 | 22 | 67 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 9.1E-22 | 23 | 76 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 7.11E-11 | 24 | 69 | No hit | No description |
PROSITE profile | PS51294 | 22.336 | 70 | 124 | IPR017930 | Myb domain |
SMART | SM00717 | 7.2E-13 | 74 | 122 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.5E-12 | 76 | 118 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 7.6E-21 | 77 | 124 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 7.93E-11 | 79 | 118 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 327 aa Download sequence Send to blast |
MATRTWSGAS GVEDEDEDET RKGPWTVEED MQLTEYIRLH GEGRWSFVAK GAGLKRTGRS 60 CRLRWVNSLR PGLKRSKITP EEERLIIELH DRWGNRWSHI ARSLPGRTDN ETKNYWRTRI 120 KGKLNLQVQS GSRGKDVDNR VHFERSLRSD CLPTSSQRPP DHDGAEPLTS FPTQGTEDAA 180 VQINKTQYLQ DDISPQVIPI HEVNDEYVLQ GETRHGPQTN DDGQPGAVSQ QDLKDSENQV 240 FENNSPYIFP VRSLASPLYS SEYCEDGASQ GGIILPSSSY MVASPEAFSD SEAYSNHYSD 300 VFWSMDEEDD RFNGRKQSVS RNDRRSY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 1e-26 | 22 | 125 | 7 | 109 | B-MYB |
Search in ModeBase |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G13480.1 | 3e-51 | myb domain protein 79 |