PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MA_734074g0010 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | LBD | ||||||||
Protein Properties | Length: 81aa MW: 8910.91 Da PI: 3.9424 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 32.8 | 2e-10 | 1 | 39 | 61 | 99 |
DUF260 61 lvyeAearardPvyGavgvilklqqqleqlkaelallke 99 +vyeA ar++dP G+vg+i++lq q++ l++ + ++++ MA_734074g0010 1 MVYEASARLQDPALGCVGIIQQLQLQISDLQSRITATQA 39 69******************************9998886 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03195 | 5.7E-8 | 1 | 38 | IPR004883 | Lateral organ boundaries, LOB |
PROSITE profile | PS50891 | 8.89 | 1 | 41 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 81 aa Download sequence Send to blast |
MVYEASARLQ DPALGCVGII QQLQLQISDL QSRITATQAT IQKIRSQQAQ LVASIPGFNN 60 KFNPTMSTSL NDSDDEDEDL E |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EF087617 | 1e-133 | EF087617.1 Picea sitchensis clone WS02730_N15 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A9P1U3 | 5e-50 | A9P1U3_PICSI; Uncharacterized protein |