PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_7164403g0010
Organism
Picea abies
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family MYB_related
Protein Properties Length: 287aa    MW: 31889.3 Da    PI: 4.0787
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_7164403g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.76.2e-092281644
                     HHHTTTT-HHHHHHHHTTTS-HHHHHHHH CS
  Myb_DNA-binding 16 vkqlGggtWktIartmgkgRtlkqcksrw 44
                     +++ G++ W+tIa++++ gRt++++k+ w
  MA_7164403g0010  2 HQLIGNR-WSTIASHLP-GRTDNEIKNVW 28
                     6778999.*********.********988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.606.8E-13133IPR009057Homeodomain-like
PROSITE profilePS5129414.98136IPR017930Myb domain
SuperFamilySSF466895.55E-8237IPR009057Homeodomain-like
PfamPF002491.4E-6228IPR001005SANT/Myb domain
CDDcd001676.24E-5228No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 287 aa     Download sequence    Send to blast
MHQLIGNRWS TIASHLPGRT DNEIKNVWGT RLKKRLARMK AESVAVDAQP APSSSLDSST  60
AEMTYQGSSP LSSQTLCNTD ARAPSAWEIC DPIYVLPELS EDLISSSNNL CTSTVDYQST  120
STDSTLDVLH SDCIDSFELE IDHSRLSINT LDELECHPLS RDLQIFIDND RNNFEDPARV  180
PAISHDEEAE MVTSSSQGMR PDCDGEIVIS AESLKNSMNL RVDSLMQQFD GAEVDWFLDH  240
LDNISPAMDS NNLATNTSQL CSTDLQVGDG MDYWRNILKQ VEPLPLF
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF6785020.0EF678502.1 Picea sitchensis clone WS02925_J15 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLB8LRH41e-174B8LRH4_PICSI; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23250.24e-16myb domain protein 15