PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MA_7105735g0010 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | MYB_related | ||||||||
Protein Properties | Length: 148aa MW: 16636.7 Da PI: 7.9175 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 28.7 | 3e-09 | 1 | 23 | 24 | 47 |
HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 24 WktIartmgkgRtlkqcksrwqky 47 W++Iar+++ gRt++++k++w +y MA_7105735g0010 1 WSLIARRLP-GRTDNDIKNYWKTY 23 *********.************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00167 | 8.82E-8 | 1 | 24 | No hit | No description |
SuperFamily | SSF46689 | 1.79E-7 | 1 | 33 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 7.5E-12 | 1 | 40 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 18.126 | 1 | 28 | IPR017930 | Myb domain |
Pfam | PF00249 | 8.2E-7 | 1 | 23 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 148 aa Download sequence Send to blast |
WSLIARRLPG RTDNDIKNYW KTYIKKKLLK RGLDHQFHRP LCSPHNSNTT RSSRPAPEHQ 60 IPAFQSPRTP EIADFFQYEL SGCSPIEPAA SKDEEHPDIN LDLCISLPLH STPAANKASS 120 VDGTVDSKSY YDHGLCCQIG LQVNYGGF |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FJ469923 | 0.0 | FJ469923.1 Picea glauca R2R3-MYB transcription factor MYB17 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | C0JTD6 | 4e-99 | C0JTD6_PICGL; R2R3-MYB transcription factor MYB17 |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38620.1 | 2e-18 | myb domain protein 4 |