PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MA_709537g0010 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | Whirly | ||||||||
Protein Properties | Length: 107aa MW: 11912.8 Da PI: 7.9203 | ||||||||
Description | Whirly family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Whirly | 125.4 | 3.2e-39 | 1 | 100 | 11 | 110 |
Whirly 11 vkavrptfealdsgnlklkraGglllelanataerkydWekkqsfalsatevaelvdlaskesceffhdpaakgsneGkvrkalkvePlpdGsGl 105 +++++p+++++dsg ++l+++G ++le+a+a++ r+ydW+kkq fals+ e+++l++l ++e+ceffhdp+ ++s++Gk+rk+lkv l d G+ MA_709537g0010 1 MQPKAPEYSTVDSGGIRLSKEGCVFLEFAPAVGIRQYDWSKKQIFALSVLELGTLLSLDPNEPCEFFHDPFVGKSEAGKIRKVLKVGMLQDTGGY 95 6899******************************************************************************************* PP Whirly 106 fvnls 110 f+nl MA_709537g0010 96 FFNLR 100 ***97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.30.31.10 | 1.2E-38 | 1 | 100 | IPR009044 | ssDNA-binding transcriptional regulator |
SuperFamily | SSF54447 | 2.04E-32 | 1 | 100 | IPR009044 | ssDNA-binding transcriptional regulator |
Pfam | PF08536 | 1.0E-38 | 1 | 100 | IPR013742 | Plant transcription factor |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 107 aa Download sequence Send to blast |
MQPKAPEYST VDSGGIRLSK EGCVFLEFAP AVGIRQYDWS KKQIFALSVL ELGTLLSLDP 60 NEPCEFFHDP FVGKSEAGKI RKVLKVGMLQ DTGGYFFNLR KFCSCLA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4koo_A | 6e-43 | 1 | 99 | 24 | 122 | Single-stranded DNA-binding protein WHY1, chloroplastic |
4koo_B | 6e-43 | 1 | 99 | 24 | 122 | Single-stranded DNA-binding protein WHY1, chloroplastic |
4koo_C | 6e-43 | 1 | 99 | 24 | 122 | Single-stranded DNA-binding protein WHY1, chloroplastic |
4koo_D | 6e-43 | 1 | 99 | 24 | 122 | Single-stranded DNA-binding protein WHY1, chloroplastic |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Single-stranded DNA-binding protein that functions in both chloroplasts and nucleus. In chloroplasts, maintains plastid genome stability by preventing break-induced and short homology-dependent illegitimate recombinations. In nucleus, modulates telomere length homeostasis by inhibiting the action of the telomerase at the extreme termini of chromosomes. Is recruited to a distal element upstream of the kinesin KP1 to mediate the transcriptional repression of KP1. Is required for full salicylic acid-dependent plant disease resistance responses. Can bind double-stranded DNA in vivo. {ECO:0000269|PubMed:14960277, ECO:0000269|PubMed:17217467, ECO:0000269|PubMed:19666500, ECO:0000269|PubMed:19669906, ECO:0000269|PubMed:20551348, ECO:0000269|PubMed:21911368}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salicylic acid (SA) and infection by H.parasitica. {ECO:0000269|PubMed:14960277, ECO:0000269|PubMed:19669906}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010527874.1 | 1e-41 | PREDICTED: single-stranded DNA-binding protein WHY1, chloroplastic-like | ||||
Refseq | XP_020869165.1 | 8e-42 | single-stranded DNA-binding protein WHY1, chloroplastic | ||||
Swissprot | Q9M9S3 | 5e-42 | WHY1_ARATH; Single-stranded DNA-binding protein WHY1, chloroplastic | ||||
TrEMBL | A9NLD1 | 1e-47 | A9NLD1_PICSI; Uncharacterized protein | ||||
TrEMBL | A9NQE8 | 2e-47 | A9NQE8_PICSI; Uncharacterized protein | ||||
STRING | evm.model.supercontig_1007.4 | 4e-41 | (Carica papaya) | ||||
STRING | fgenesh2_kg.1__1569__AT1G14410.1 | 3e-41 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP2316 | 16 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G14410.1 | 5e-36 | ssDNA-binding transcriptional regulator |