PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MA_7055g0010 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | MYB | ||||||||
Protein Properties | Length: 438aa MW: 48314.3 Da PI: 5.257 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 48.9 | 1.5e-15 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT eEd++l ++++ +G g W+ +++ g+ R++k+c++rw +yl MA_7055g0010 14 RGPWTLEEDLRLTNYIEAHGEGGWTNLPKKAGLLRCGKSCRLRWMNYL 61 89******************************99************97 PP | |||||||
2 | Myb_DNA-binding | 46.9 | 6.5e-15 | 73 | 112 | 7 | 48 |
HHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 7 eEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +E++l+++++++lG++ W++Ia +m+ gRt++++k++w+++l MA_7055g0010 73 DEEDLILRLHRLLGNR-WSLIAGRMP-GRTDNEIKNYWNTHL 112 7***************.*********.************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 5.2E-20 | 7 | 63 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 13.988 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 7.65E-28 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.4E-11 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.4E-13 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.35E-9 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 24.191 | 62 | 116 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.2E-23 | 64 | 116 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.4E-13 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.3E-13 | 73 | 112 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.93E-11 | 73 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 438 aa Download sequence Send to blast |
MGRTPSSLNA GLNRGPWTLE EDLRLTNYIE AHGEGGWTNL PKKAGLLRCG KSCRLRWMNY 60 LRPDVKRGHI LLDEEDLILR LHRLLGNRWS LIAGRMPGRT DNEIKNYWNT HLSKKLLSQG 120 IDPRTHKPLS ESQNVTFSAP GDSETSQKSK QDKNTTIPGN IEESGADLQD EEEIAAQGNE 180 DQAAATWPGN NANNQLNPES SLICNPQPVS VPISMSPQAP VISSTAFQES TSTCVAEAVS 240 DSIVINHNKG SKQISFPLLN TACFNSSEQL AGVGRYDLDQ YLMNNPVTSS NDMITSTVRL 300 SSALQTAPFV GQFDSNQAFI SGNALLNEKH RMSLQNLQAL EMNPQPSFLV NPSEETIYNK 360 LSHTSCAVPD QIAAACSYSY PVIPTAMGTA LGDFNSDIFP SLLWEQLLEI LIQISSLPFW 420 DHLVMRSCSY KNPVQILQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 8e-27 | 8 | 116 | 21 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT101000 | 0.0 | BT101000.1 Picea glauca clone GQ0063_D17 mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | B8LNN4 | 1e-141 | B8LNN4_PICSI; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G09460.1 | 8e-56 | myb domain protein 6 |