PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_70076g0010
Organism
Picea abies
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family C2H2
Protein Properties Length: 599aa    MW: 66554.5 Da    PI: 5.4268
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_70076g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.80.000752951123
                   EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                   y C++C+k+F +   L  H+r H
  MA_70076g0010 29 YFCKICSKRFVSGRALGGHMRAH 51
                   78*******************98 PP
2zf-C2H2120.00063137155321
                    ETTTTEEESSHHHHHHHHH CS
        zf-C2H2   3 CpdCgksFsrksnLkrHir 21 
                    C  Cgk Fs++  L  H++
  MA_70076g0010 137 CDLCGKEFSSWKGLFGHMK 155
                    9*****************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.9722951IPR007087Zinc finger, C2H2
SMARTSM003550.0272951IPR015880Zinc finger, C2H2-like
SuperFamilySSF576678.02E-82951No hitNo description
PfamPF139121.1E-73151IPR007087Zinc finger, C2H2
PROSITE patternPS0002803151IPR007087Zinc finger, C2H2
SuperFamilySSF576678.02E-8130157No hitNo description
PROSITE profilePS5015710.118135162IPR007087Zinc finger, C2H2
SMARTSM003550.0083135157IPR015880Zinc finger, C2H2-like
PfamPF139129.4E-7136159IPR007087Zinc finger, C2H2
PROSITE patternPS000280137157IPR007087Zinc finger, C2H2
PfamPF139123.4E-12309334IPR007087Zinc finger, C2H2
SMARTSM003550.069310332IPR015880Zinc finger, C2H2-like
SuperFamilySSF576672.17E-7310332No hitNo description
PROSITE profilePS5015710.055310337IPR007087Zinc finger, C2H2
PROSITE patternPS000280312332IPR007087Zinc finger, C2H2
SuperFamilySSF576672.17E-7404431No hitNo description
PfamPF139123.5E-13408433IPR007087Zinc finger, C2H2
PROSITE profilePS501579.889409436IPR007087Zinc finger, C2H2
SMARTSM003550.44409431IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280411431IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 599 aa     Download sequence    Send to blast
MTTVDILYPS SQAMEVFKKQ EEGEHPLSYF CKICSKRFVS GRALGGHMRA HGPASMAADT  60
LSETEFQKTK RPGASDDKLM EEKGEEEDEE GLDGNGSNLM YALRRNPKRS WRLADRDYSF  120
LLGHGFDSKP IDSSVNCDLC GKEFSSWKGL FGHMKCHSET HQASGDAHLE ESQKHETQDE  180
DEEEEESESD AEIEIDQPNG NSSRFDKCMK GKRSKRPRYA IQLNPHEQFG SETNNEDEDM  240
AMCLVMLASG VNTAQNPQFQ AGAEEHGSGD PKPPNTASQL PKCIKKKPKS KKMDGDAGLY  300
DGDEAKKARY NCTTCNKVFH SYQALGGHRA SHKKVKGCFS QIEDENESLQ EEITDEELIT  360
GSDSRLPVNF HKPLPKERTK DSCIETREAS DETTTIQPAA FSGKKTRVHE CSICHRVFSS  420
GQALGGHKRC HWGSAGASDT ISTISSNKET PMQQQMPARV ELLDLNLPAP IDDDCEAGNL  480
NNLGRNAVDF HGASYAETRS KISPPYFQSW LMDRYPKQGL FLYNNNTHVS KDDEADSKLG  540
KEIGFGGGCD SDFPVKAQSW LQLSLKRFDS DTSYSSGILE LSETSSHSFR TQAERPGTC
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0C9RQJ10.0A0A0C9RQJ1_9SPER; TSA: Wollemia nobilis Ref_Wollemi_Transcript_25048_2114 transcribed RNA sequence
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP2521820
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03510.13e-25C2H2 family protein