PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MA_69787g0010 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | Trihelix | ||||||||
Protein Properties | Length: 132aa MW: 14633.6 Da PI: 10.7986 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 52 | 1.8e-16 | 53 | 120 | 14 | 86 |
trihelix 14 rremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 r eme+r+ +++++++lWee ++ + ++g++r kqC+ekw++l ++k + +g+++r s+ py+ +l+ MA_69787g0010 53 RAEMESRFAKSARRAALWEELAELLGAEGIKRDGKQCREKWDKLMAEFKDVSDGKRDR-----SESPYYAELT 120 789*****************************************************97.....3458999987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd12203 | 5.34E-18 | 53 | 103 | No hit | No description |
Pfam | PF13837 | 8.8E-13 | 55 | 121 | No hit | No description |
PROSITE profile | PS50090 | 6.086 | 70 | 97 | IPR017877 | Myb-like domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 132 aa Download sequence Send to blast |
MVTRGFAGLK NSNPNRPRGV LNRLITTLAQ LLLPSSAAVE GRRRGQRIGS ERRAEMESRF 60 AKSARRAALW EELAELLGAE GIKRDGKQCR EKWDKLMAEF KDVSDGKRDR SESPYYAELT 120 ATVGPGRSAE AG |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EF083869 | 1e-131 | EF083869.1 Picea sitchensis clone WS0291_D09 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024395857.1 | 3e-32 | trihelix transcription factor GTL1-like | ||||
TrEMBL | A9NRE1 | 4e-46 | A9NRE1_PICSI; Uncharacterized protein | ||||
STRING | PP1S224_109V6.1 | 1e-31 | (Physcomitrella patens) |