PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MA_6943842g0010

Organism

Picea abies

Taxonomic ID

3329

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea

Family

WRKY

Protein Properties

Length: 351aa MW: 38817.9 Da PI: 5.7205

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MA_6943842g0010	genome	ConGenIE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	90.9	1e-28	258	316	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +D ++WrKYG+K++kgs++pr+YYrC+s+ gC+++k+vers ++p+++++tY+++Hnh+ MA_6943842g0010 258 SDMWAWRKYGKKPIKGSPYPRGYYRCSSSkGCCARKQVERSCTEPSMLIVTYTSDHNHP 316 69***********************998**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	1.0E-29	251	318	IPR003657	WRKY domain
SuperFamily	SSF118290	9.42E-25	255	318	IPR003657	WRKY domain
SMART	SM00774	1.5E-32	257	317	IPR003657	WRKY domain
PROSITE profile	PS50811	30.641	258	318	IPR003657	WRKY domain
Pfam	PF03106	5.6E-24	259	316	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 351 aa Download sequence Send to blast
MHGYEFGKDS GMDPRALIAV YKALYRQFGG FFADVVASID QVVEISNFWG AAWEKMVLED 60 HCCNEIKGKE MGKGFQLPIR SLSPSSMLEC HSSMAFIDAT STLGLLSFDP GSADADVSNF 120 YPLRRCAASC HEGMAVLYPD KQENSCNQMN EGKIMFETSI VKQELEDKLD FVQLASFVYN 180 DELVEALQAS SNLGEETNNK SCDLPCSPVM RDSLERSTGE DCDVKTAPCS KGRKTIEKKV 240 VCVPVGPVDG RQNDGPPSDM WAWRKYGKKP IKGSPYPRGY YRCSSSKGCC ARKQVERSCT 300 EPSMLIVTYT SDHNHPWPAN RVNSNLNSGL LAKQSQLETS PILSEKSSNI S

Sequence ? help Back to Top

Protein Sequence Length: 351 aa Download sequence Send to blast

MHGYEFGKDS GMDPRALIAV YKALYRQFGG FFADVVASID QVVEISNFWG AAWEKMVLED  60
HCCNEIKGKE MGKGFQLPIR SLSPSSMLEC HSSMAFIDAT STLGLLSFDP GSADADVSNF  120
YPLRRCAASC HEGMAVLYPD KQENSCNQMN EGKIMFETSI VKQELEDKLD FVQLASFVYN  180
DELVEALQAS SNLGEETNNK SCDLPCSPVM RDSLERSTGE DCDVKTAPCS KGRKTIEKKV  240
VCVPVGPVDG RQNDGPPSDM WAWRKYGKKP IKGSPYPRGY YRCSSSKGCC ARKQVERSCT  300
EPSMLIVTYT SDHNHPWPAN RVNSNLNSGL LAKQSQLETS PILSEKSSNI S

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5w3x_B	1e-19	238	319	6	80	Disease resistance protein RRS1
5w3x_D	1e-19	238	319	6	80	Disease resistance protein RRS1
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Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT110986	0.0	BT110986.1 Picea glauca clone GQ03230_M23 mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A0D6R4G3	1e-80	A0A0D6R4G3_ARACU; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP14	17	875

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G58710.2	4e-42	WRKY DNA-binding protein 69