PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MA_69407g0010 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | MYB | ||||||||
Protein Properties | Length: 373aa MW: 42149.6 Da PI: 8.1649 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 45.7 | 1.5e-14 | 60 | 107 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT+ Ed +l ++++ +G g W+ +++ g++R++k+c++rw +yl MA_69407g0010 60 RGAWTEKEDMILSEYIRIHGDGKWRYLPEKAGLKRCGKSCRLRWVNYL 107 89********************************************97 PP | |||||||
2 | Myb_DNA-binding | 44.5 | 3.6e-14 | 113 | 157 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg+ ++ E+el+++++++lG++ W++Ia +++ gRt+ ++k++w+ + MA_69407g0010 113 RGNISPYEEELIIRLHRLLGNR-WSLIAGRLP-GRTDSEIKNYWNCH 157 7888999***************.*********.***********977 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 3.0E-21 | 51 | 110 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 14.542 | 55 | 107 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 5.86E-27 | 57 | 154 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.7E-10 | 59 | 109 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.6E-12 | 60 | 107 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.56E-8 | 62 | 107 | No hit | No description |
PROSITE profile | PS51294 | 22.739 | 108 | 162 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.2E-22 | 111 | 162 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.0E-13 | 112 | 160 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.6E-12 | 113 | 155 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.75E-10 | 120 | 158 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 373 aa Download sequence Send to blast |
MTGSPARTLA VLTLLHGMSL AGQHPEAQSR SSAAELAITD YIRRSNMGRS PCCSKQGLNR 60 GAWTEKEDMI LSEYIRIHGD GKWRYLPEKA GLKRCGKSCR LRWVNYLHPD IKRGNISPYE 120 EELIIRLHRL LGNRWSLIAG RLPGRTDSEI KNYWNCHLGK KLLSMNQSKL KSSKHNLNRR 180 SKDPPPRQNY VYRATPVRIS TAVRQSELVK LNSGSEIRSA DHAFKLSNIK ETMNCSQSSC 240 HLLVNNDSEH MAFGMADVNL VKTEGTNSPC SMWNLADQKL PHSDHFAEHA ATLDGSLFDL 300 KEISSSQSDF LTDFGLEDFY SGPARLSTET NEIEYVWSEQ SNMQNVNSLT FAGEQGIQEC 360 YDSTHPLLEY ILN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 7e-22 | 58 | 162 | 5 | 108 | B-MYB |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT116752 | 1e-111 | BT116752.1 Picea glauca clone GQ03806_A01 mRNA sequence. | |||
GenBank | KU131219 | 1e-111 | KU131219.1 Picea abies transcription factor MYB30 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023899027.1 | 1e-68 | transcription factor TT2-like | ||||
TrEMBL | A0A167V901 | 1e-126 | A0A167V901_PICAB; Transcription factor MYB30 |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G22640.1 | 1e-51 | myb domain protein 3 |