PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_6805g0010
Organism
Picea abies
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family MIKC_MADS
Protein Properties Length: 188aa    MW: 21636.7 Da    PI: 8.1989
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_6805g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF84.56.2e-27959151
                  S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
        SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                  krien + rq tfskRr+g+lKKA+ELS+LCdae+avi+fss+gk++ y+s
  MA_6805g0010  9 KRIENPTSRQATFSKRRAGLLKKAKELSILCDAEIAVIVFSSSGKVFQYAS 59
                  79***********************************************86 PP
2K-box71.32.9e-24851741099
         K-box  10 eeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                    e   ++ + +lakLk + e++q  +Rh++GedLe L+ +eLqq+e+++e ++ ++R+kKn+ +l+ i+e  + e++l+eenk+Lr+++e
  MA_6805g0010  85 VEYSDNNENIQLAKLKLQAEQMQLVLRHMMGEDLEGLDTEELQQMEEKMELGMGRVRAKKNQCMLNRIKEITNTERDLREENKSLRRRVE 174
                   444456677789***************************************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004328.4E-41160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006631.847161IPR002100Transcription factor, MADS-box
SuperFamilySSF554558.37E-32282IPR002100Transcription factor, MADS-box
CDDcd002651.37E-43274No hitNo description
PRINTSPR004045.8E-29323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003191.1E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004045.8E-292338IPR002100Transcription factor, MADS-box
PRINTSPR004045.8E-293859IPR002100Transcription factor, MADS-box
PROSITE profilePS5129714.0589179IPR002487Transcription factor, K-box
PfamPF014862.1E-1993173IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001708Biological Processcell fate specification
GO:0009553Biological Processembryo sac development
GO:0009933Biological Processmeristem structural organization
GO:0010076Biological Processmaintenance of floral meristem identity
GO:0010094Biological Processspecification of carpel identity
GO:0010582Biological Processfloral meristem determinacy
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048455Biological Processstamen formation
GO:0048459Biological Processfloral whorl structural organization
GO:0048509Biological Processregulation of meristem development
GO:0048833Biological Processspecification of floral organ number
GO:0080060Biological Processintegument development
GO:0080112Biological Processseed growth
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 188 aa     Download sequence    Send to blast
MGRGKIEIKR IENPTSRQAT FSKRRAGLLK KAKELSILCD AEIAVIVFSS SGKVFQYASS  60
DMQLILERYK KGSDQPSQSE SHALVEYSDN NENIQLAKLK LQAEQMQLVL RHMMGEDLEG  120
LDTEELQQME EKMELGMGRV RAKKNQCMLN RIKEITNTER DLREENKSLR RRVEDVVNND  180
YLTSVPQT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6bz1_A1e-25185184MEF2 CHIMERA
6bz1_B1e-25185184MEF2 CHIMERA
6bz1_C1e-25185184MEF2 CHIMERA
6bz1_D1e-25185184MEF2 CHIMERA
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1137145GRVRAKKNQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00096ChIP-seqTransfer from AT1G69120Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024373424.11e-50MADS-box protein GGM13-like isoform X1
SwissprotQ9XGJ49e-48GGM13_GNEGN; MADS-box protein GGM13
TrEMBLQ8LLC89e-51Q8LLC8_SPIAN; MADS-box gene 2 protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1617761
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G24260.11e-36MIKC_MADS family protein
Publications ? help Back to Top
  1. Winter KU, et al.
    MADS-box genes reveal that gnetophytes are more closely related to conifers than to flowering plants.
    Proc. Natl. Acad. Sci. U.S.A., 1999. 96(13): p. 7342-7
    [PMID:10377416]