PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MA_6777g0010

Organism

Picea abies

Taxonomic ID

3329

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea

Family

NAC

Protein Properties

Length: 441aa MW: 49992.9 Da PI: 6.9217

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MA_6777g0010	genome	ConGenIE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	135	5.2e-42	113	223	20	129
NAM 20 kkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgra 113 +kkv++k+++l +vik++d+yk+ePwdL++ k+ + e++ewyfFs++dkky+tg+r+nrat++g+Wkatg+dk++++ k +l+g++ktLvfykgra MA_6777g0010 113 RKKVAAKRIDL-DVIKDIDLYKIEPWDLQEkcKIGSeEQTEWYFFSHKDKKYPTGTRTNRATAAGFWKATGRDKAIYC-KLNLIGMRKTLVFYKGRA 207 78999999999.99************952444442455**********************************.999*********** PP NAM 114 pkgektdWvmheyrle 129 p+g+k+dW+mheyrle MA_6777g0010 208 PNGQKSDWIMHEYRLE 223 ************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	45.361	94	243	IPR003441	NAC domain
SuperFamily	SSF101941	1.44E-45	113	243	IPR003441	NAC domain
Pfam	PF02365	8.1E-16	136	222	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0048759	Biological Process	xylem vessel member cell differentiation
GO:1901348	Biological Process	positive regulation of secondary cell wall biogenesis
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 441 aa Download sequence Send to blast
ISRLSEEDGV SYPPSVLSVR SNGGDNWALR AGTHALELLS CDRARGKFDR GVDVKQARAV 60 NCSLRVSAPW TTAFESSRAA CSEVEGKSVA STNYFCKVEI YYYNEHAISR SSRKKVAAKR 120 IDLDVIKDID LYKIEPWDLQ EKCKIGSEEQ TEWYFFSHKD KKYPTGTRTN RATAAGFWKA 180 TGRDKAIYCK LNLIGMRKTL VFYKGRAPNG QKSDWIMHEY RLETNENATP QEEGWVVCRV 240 FKKRITTQRK GNDDTVCWYE DQVGLLPELD SPKKLPQGGD MGYQLPFACK QELELHYHMS 300 HDSFLQLPQL ESPKVPCNAS SSAPGKRAEC SMPYNGFETG CNMEGHHGNA NPQSAATQED 360 QHAVNTYNEE QVTDWRVLDK FVASQLSQED VSKDARFPNE TMYPIPDHMT VLLRQSNKHE 420 QQGDYASNSN CDVDLWSFAG K

Sequence ? help Back to Top

Protein Sequence Length: 441 aa Download sequence Send to blast

ISRLSEEDGV SYPPSVLSVR SNGGDNWALR AGTHALELLS CDRARGKFDR GVDVKQARAV  60
NCSLRVSAPW TTAFESSRAA CSEVEGKSVA STNYFCKVEI YYYNEHAISR SSRKKVAAKR  120
IDLDVIKDID LYKIEPWDLQ EKCKIGSEEQ TEWYFFSHKD KKYPTGTRTN RATAAGFWKA  180
TGRDKAIYCK LNLIGMRKTL VFYKGRAPNG QKSDWIMHEY RLETNENATP QEEGWVVCRV  240
FKKRITTQRK GNDDTVCWYE DQVGLLPELD SPKKLPQGGD MGYQLPFACK QELELHYHMS  300
HDSFLQLPQL ESPKVPCNAS SSAPGKRAEC SMPYNGFETG CNMEGHHGNA NPQSAATQED  360
QHAVNTYNEE QVTDWRVLDK FVASQLSQED VSKDARFPNE TMYPIPDHMT VLLRQSNKHE  420
QQGDYASNSN CDVDLWSFAG K

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-38	114	249	37	171	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-38	114	249	37	171	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-38	114	249	37	171	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-38	114	249	37	171	NO APICAL MERISTEM PROTEIN
4dul_A	2e-38	114	249	37	171	NAC domain-containing protein 19
4dul_B	2e-38	114	249	37	171	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:16103214, PubMed:25148240). {ECO:0000250\|UniProtKB:Q9LVA1, ECO:0000269\|PubMed:16103214, ECO:0000269\|PubMed:25148240}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00136	DAP	Transfer from AT1G12260	Download

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT102049	0.0	BT102049.1 Picea glauca clone GQ0165_B14 mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010264210.1	1e-151	PREDICTED: NAC domain-containing protein 7
Swissprot	Q9FWX2	1e-108	NAC7_ARATH; NAC domain-containing protein 7
TrEMBL	A0A1U8AN73	1e-150	A0A1U8AN73_NELNU; NAC domain-containing protein 7
STRING	XP_010264210.1	1e-151	(Nelumbo nucifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP17	15	800

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G12260.1	1e-101	NAC 007

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Heyndrickx KS,Vandepoele K Systematic identification of functional plant modules through the integration of complementary data sources. Plant Physiol., 2012. 159(3): p. 884-901 [PMID:22589469]