PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MA_6763g0010

Organism

Picea abies

Taxonomic ID

3329

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea

Family

TALE

Protein Properties

Length: 990aa MW: 109782 Da PI: 8.216

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MA_6763g0010	genome	ConGenIE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	28.6	2.5e-09	693	730	19	54
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yp+ +++ LAk++gLt +qV++WF N R + MA_6763g0010 693 FEHflHPYPTDADKHILAKQTGLTRSQVSNWFINARVR 730 554459******************************88 PP
2	BELL	115	3.7e-37	555	625	2	72
BELL 2 rqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 r elq++kakL+s+l+eVd+rY+ y++q++ v+ssFe v lg+a+pYt+lAlka+SrhFrcLkdai++q+ MA_6763g0010 555 RFELQRRKAKLVSMLDEVDRRYRNYCDQMHLVVSSFESVSTLGAAAPYTALALKAMSRHFRCLKDAITGQL 625 779*****************************************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00574	8.3E-54	480	623	IPR006563	POX domain
Pfam	PF07526	4.5E-47	486	622	IPR006563	POX domain
PROSITE profile	PS50071	12.39	671	734	IPR001356	Homeobox domain
CDD	cd00086	1.20E-12	674	735	No hit	No description
SMART	SM00389	5.6E-10	674	738	IPR001356	Homeobox domain
SuperFamily	SSF46689	3.51E-17	675	741	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.6E-28	677	741	IPR009057	Homeodomain-like
Pfam	PF05920	3.9E-18	691	730	IPR008422	Homeobox KN domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009965	Biological Process	leaf morphogenesis
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 990 aa Download sequence Send to blast
MWGRLWGYCT VDIVRTSYRG NVAVGRLPRK RSDGQCYRWR EAKKRTMLTE DYFGNHDGLI 60 RWGKKREPVI GRRGGRVKRV LLKWLRVFGF RCSSSADGVA VELLEWTIKP VFIRLELTDF 120 FLGFLGVSRG IELLAFSSKN PFLDNSEAEA SSRSAVIGTS YQGLGNPGAN LGNWKSFNAP 180 QNRSNTGWAA PSIIVPNNIQ QHHGGLPSYS GQIIPNPIIV ARGGSMQVSS SGDIRKGDMD 240 VASQNPHHQT DGTHLYLMNP KYPNQYPEGT STAAANMTEI RPTNGLTPQG FEAQKNILEF 300 AHFPSQIPTI ISEASPSLRE PSHGTGSDLP GSENMQHSQL VLTQFNNSVN WATRYSGSQS 360 WNREQFIENK VDESFRSEYS SKGQDGSGQR LSLSLSSHQP SEIHLPDIAN QTNVLQFGGD 420 AKSKLGDLFN SAHGTDGLAY NISSYSRNGI PGKGMMDSIQ GGGRSAVLQY MKDGSTGACA 480 GYGISLKNSR YLKAAQEILY EFCNVGRGFE TKASPKQKLS MGVNVIPGSS STRSHEFGAK 540 TETGMMNQPF YSEDRFELQR RKAKLVSMLD EVDRRYRNYC DQMHLVVSSF ESVSTLGAAA 600 PYTALALKAM SRHFRCLKDA ITGQLQVTIK ALGEKGSVVP GTSRGETPRL GFLERSIRQQ 660 RAFHHLGLME QHPWRPQRGL PERSVSVLRA WLFEHFLHPY PTDADKHILA KQTGLTRSQV 720 SNWFINARVR LWKPMVEEMY MEEIKEEKVD EVGQNAEAER STGTNNDEKT MFNSGGPGSK 780 CTANSEEAAF KLDHSSSTTS QTAQAEISSG NVTLHLQSKD PEMAVARETS EPLSSMNTSH 840 EGDMKLDEAP GYNIFDQDKG FRSELYASKF QTADHTGMAV DFSSYNNTTA STTVTAYSHG 900 DLTPRHFASN GVSLTLGLRH SGGLSYNPLS EQKYDNNIYF SRVHDDADPN NQYSMLDSEV 960 SPGNGFMQEQ DIQYRNYIVN GSRLLHDFVG

Sequence ? help Back to Top

Protein Sequence Length: 990 aa Download sequence Send to blast

MWGRLWGYCT VDIVRTSYRG NVAVGRLPRK RSDGQCYRWR EAKKRTMLTE DYFGNHDGLI  60
RWGKKREPVI GRRGGRVKRV LLKWLRVFGF RCSSSADGVA VELLEWTIKP VFIRLELTDF  120
FLGFLGVSRG IELLAFSSKN PFLDNSEAEA SSRSAVIGTS YQGLGNPGAN LGNWKSFNAP  180
QNRSNTGWAA PSIIVPNNIQ QHHGGLPSYS GQIIPNPIIV ARGGSMQVSS SGDIRKGDMD  240
VASQNPHHQT DGTHLYLMNP KYPNQYPEGT STAAANMTEI RPTNGLTPQG FEAQKNILEF  300
AHFPSQIPTI ISEASPSLRE PSHGTGSDLP GSENMQHSQL VLTQFNNSVN WATRYSGSQS  360
WNREQFIENK VDESFRSEYS SKGQDGSGQR LSLSLSSHQP SEIHLPDIAN QTNVLQFGGD  420
AKSKLGDLFN SAHGTDGLAY NISSYSRNGI PGKGMMDSIQ GGGRSAVLQY MKDGSTGACA  480
GYGISLKNSR YLKAAQEILY EFCNVGRGFE TKASPKQKLS MGVNVIPGSS STRSHEFGAK  540
TETGMMNQPF YSEDRFELQR RKAKLVSMLD EVDRRYRNYC DQMHLVVSSF ESVSTLGAAA  600
PYTALALKAM SRHFRCLKDA ITGQLQVTIK ALGEKGSVVP GTSRGETPRL GFLERSIRQQ  660
RAFHHLGLME QHPWRPQRGL PERSVSVLRA WLFEHFLHPY PTDADKHILA KQTGLTRSQV  720
SNWFINARVR LWKPMVEEMY MEEIKEEKVD EVGQNAEAER STGTNNDEKT MFNSGGPGSK  780
CTANSEEAAF KLDHSSSTTS QTAQAEISSG NVTLHLQSKD PEMAVARETS EPLSSMNTSH  840
EGDMKLDEAP GYNIFDQDKG FRSELYASKF QTADHTGMAV DFSSYNNTTA STTVTAYSHG  900
DLTPRHFASN GVSLTLGLRH SGGLSYNPLS EQKYDNNIYF SRVHDDADPN NQYSMLDSEV  960
SPGNGFMQEQ DIQYRNYIVN GSRLLHDFVG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4xrm_A	4e-16	680	738	5	63	Homeobox protein Meis2
4xrm_B	4e-16	680	738	5	63	Homeobox protein Meis2
4xrs_A	3e-16	680	737	1	58	Homeobox protein Meis1
4xrs_B	3e-16	680	737	1	58	Homeobox protein Meis1
5bng_A	3e-16	680	738	1	59	Homeobox protein Meis2
5bng_B	3e-16	680	738	1	59	Homeobox protein Meis2

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT103397	0.0	BT103397.1 Picea glauca clone GQ02512_F23 mRNA sequence.

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP133	16	172

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G23760.3	1e-86	BEL1-like homeodomain 4