PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MA_66847g0010

Organism

Picea abies

Taxonomic ID

3329

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea

Family

NAC

Protein Properties

Length: 407aa MW: 46066.8 Da PI: 7.2076

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MA_66847g0010	genome	ConGenIE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	104.4	1.5e-32	55	198	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk......lelee....vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra........ 77 lp G++F+Ptd++l+ ++L+ kv ++ l + +++ +i++++P++Lp v+ e +fF++ +k+y+tg+rk+r+ MA_66847g0010 55 LPSGVKFDPTDQQLI-QHLQGKVGVENstphplL---DrfitTLEGEeGICYTHPERLP-GVSREGPIKHFFHRPSKAYTTGTRKRRKiqadsnhd 145 699**********.99988876775552...222213443337******.555566678**************856776665 PP NAM 78 .tksgyWkatgkdkevlskkgelvglkktLvfyk..grapkgektdWvmheyrl 128 + +W++tgk+++vl +g+++g+kk+Lv+yk g+++k+ekt+Wvmh+y+l MA_66847g0010 146 nEGETRWHKTGKTRPVLI-NGKHKGCKKILVLYKnfGKNKKPEKTNWVMHQYHL 198 544788********.9999******744699999********98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.2E-34	48	217	IPR003441	NAC domain
PROSITE profile	PS51005	31.335	55	217	IPR003441	NAC domain
Pfam	PF02365	6.6E-15	56	198	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 407 aa Download sequence Send to blast
MECFVHGKLL AEKPKTPTST SQLINAKLEE HRIQQCHGCG HKIEREKPIG DCPGLPSGVK 60 FDPTDQQLIQ HLQGKVGVEN STPHPLLDRF ITTLEGEEGI CYTHPERLPG VSREGPIKHF 120 FHRPSKAYTT GTRKRRKIQA DSNHDNEGET RWHKTGKTRP VLINGKHKGC KKILVLYKNF 180 GKNKKPEKTN WVMHQYHLGS QEEEKEGELV VSKVFYQRQP RQCNFEKAAN IGDRKASAQG 240 IDRKEHKGSE SSECSPLWHP GNLEVGLRLS KENQLVQASD HAGMHPNIIK EDWACKLEES 300 KNGYVGLDEH HITRLLQCHE TQMDGISNAN PLSYSTQELN DIAEALGLSL NDQEGSAQKI 360 DRQLEDIFMY PPPELQKTLS NSQEADWLEY SFCPDSYNGC SHYGGLI

Sequence ? help Back to Top

Protein Sequence Length: 407 aa Download sequence Send to blast

MECFVHGKLL AEKPKTPTST SQLINAKLEE HRIQQCHGCG HKIEREKPIG DCPGLPSGVK  60
FDPTDQQLIQ HLQGKVGVEN STPHPLLDRF ITTLEGEEGI CYTHPERLPG VSREGPIKHF  120
FHRPSKAYTT GTRKRRKIQA DSNHDNEGET RWHKTGKTRP VLINGKHKGC KKILVLYKNF  180
GKNKKPEKTN WVMHQYHLGS QEEEKEGELV VSKVFYQRQP RQCNFEKAAN IGDRKASAQG  240
IDRKEHKGSE SSECSPLWHP GNLEVGLRLS KENQLVQASD HAGMHPNIIK EDWACKLEES  300
KNGYVGLDEH HITRLLQCHE TQMDGISNAN PLSYSTQELN DIAEALGLSL NDQEGSAQKI  360
DRQLEDIFMY PPPELQKTLS NSQEADWLEY SFCPDSYNGC SHYGGLI

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator involved in xylem formation (PubMed:25265867, PubMed:25535195). Promotes the expression of the secondary wall-associated transcription factor MYB46 (PubMed:25265867). Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867, PubMed:25535195). Acts as upstream regulator of NAC101/VND6 and LBD30/ASL19 (PubMed:25535195). {ECO:0000269\|PubMed:25265867, ECO:0000269\|PubMed:25535195}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT100869	0.0	BT100869.1 Picea glauca clone GQ0047_M24 mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019191566.1	1e-104	PREDICTED: NAC domain-containing protein 102
Refseq	XP_019191567.1	1e-104	PREDICTED: NAC domain-containing protein 102
Swissprot	Q9M0F8	1e-100	NAC75_ARATH; NAC domain-containing protein 75
STRING	XP_010688374.1	1e-102	(Beta vulgaris)
STRING	POPTR_0018s06790.1	1e-103	(Populus trichocarpa)
STRING	XP_008354424.1	1e-103	(Malus domestica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP525	15	85

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G29230.1	1e-102	NAC domain containing protein 75

Publications ? help Back to Top
Droc G, et al. OryGenesDB: a database for rice reverse genetics. Nucleic Acids Res., 2006. 34(Database issue): p. D736-40 [PMID:16381969] Sakamoto S,Mitsuda N Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant. Plant Cell Physiol., 2015. 56(2): p. 299-310 [PMID:25535195]